Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq21249 147 3e-30 seq4590 105 1e-17 >seq21249 Length=26544 Score = 147 bits (162), Expect = 3e-30 Identities = 210/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | |||||||| || ||||||||| || ||||| ||| | || ||| | Sbjct 5692 GGAAAGCTGTGAACGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 5633 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||| ||| | |||| Sbjct 5632 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAATACTCAGGGG 5573 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || ||||||| ||||||| ||||| || || || | ||| | || Sbjct 5572 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAAAATGGTGCTCCAATCTCCACCATTG 5513 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 5512 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 5453 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 5452 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 5397 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| ||||| || || ||||| || Sbjct 3653 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 3594 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || ||||||||||| || || Sbjct 3593 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATTAAGCCTGGG 3534 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || || |||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 3533 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 3474 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || || |||||||| || ||||| | | Sbjct 3473 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGGTACATTTCTCCATCAATCATC 3414 Query 9967 TG 9968 || Sbjct 3413 TG 3412 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | || |||| | ||| ||| | ||| Sbjct 4871 ATGGAGTTGTTGTAGAGGAACTGCTGAAAAGTGTACTCCTGGTCATGTATTTGGAAAGTG 4812 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| ||||| || || || || |||||||||||| Sbjct 4811 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTAAATTCAGCTGCAATTCGGTTCTGG 4752 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| ||||| || ||||| | || | ||||||||| | Sbjct 4751 TATTGAAATCGCTGGT--TGAACAGCAACTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 4694 Query 9671 CGCTGAGTTGCTGGACATA 9689 | || | || || ||||| Sbjct 4693 CACTCAAGTGTTGTACATA 4675 >seq4590 Length=11299 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8966 CCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGCCCT 9025 ||||| || || ||||||||||||||| | ||||||||||| ||| | | ||||| Sbjct 899 CCGCCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATTGGGTTTCCAAGAAGCCCC 958 Query 9026 TTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGACGC 9085 |||| |||||| ||||| || | ||| | ||||| || || || || || ||| | Sbjct 959 TTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTTGG 1018 Query 9086 GGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGGGCT 9145 ||||| || | | ||||| | |||| || | ||| || | ||| ||||| || || Sbjct 1019 GGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGAGCGTCAATGTCTCCATACAGCTCT 1078 Query 9146 TCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 |||| || || ||| |||| | ||| ||| || Sbjct 1079 TCCAGTTCTGCCGCTTTCTCTTCCTCTCCTGCA 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723346414412000