Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq25668 127 2e-24 seq21656 120 3e-22 >seq25668 Length=3966 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||| || ||||| ||||| ||||| || || || |||||| | Sbjct 403 CGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGCCCA 344 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | ||||||||| | || | || ||||||| Sbjct 343 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 284 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | |||||||| | ||||| |||| |||||| Sbjct 283 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATG 224 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || ||||| || || || || || ||||| ||||| || Sbjct 223 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTT 186 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | |||| ||| ||||| | || ||||| |||||||||||||| || Sbjct 643 CCACCTCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGAC 584 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || || ||||| || || || ||||| | ||||||||| | || Sbjct 583 AGGGTGCGCCCATCTTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGG 524 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||||||||| |||||| ||| | || | | | || || | ||| || Sbjct 523 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGTTATCACTGGGTTCAACT 464 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 463 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 417 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| |||| |||| || ||||| ||||| |||||||| || || |||||| | Sbjct 859 CGCAAGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 800 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || ||||||| | ||||||||| | || | || |||||| Sbjct 799 TCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTG 740 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | || || |||| || || || | |||||| Sbjct 739 TCCTGGATCTTGGCCTTCACATTCTCAATAGTATCACTCGGCTCGACCTCAAGGGTGATG 680 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || || || ||||| ||||| Sbjct 679 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 645 >seq21656 Length=48212 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||||| ||| ||||| | || ||||| ||||| |||||||| | Sbjct 723 TGCCACCTCTCAGACGCAGCACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 664 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||||||||| || || |||| | ||||||||| | | Sbjct 663 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 604 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| |||||| ||| | || | | ||||| || | || | Sbjct 603 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 544 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 543 CCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 495 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||| ||||| | || ||||| ||||| ||||||||||| Sbjct 1178 GCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGA 1119 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || || | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 1118 CAGGGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 1059 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || |||||| |||||| ||| | || | | ||||| || | || || Sbjct 1058 AATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 999 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 998 CTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564940378053600