Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq25668 116 2e-21 seq21656 98.7 6e-16 >seq25668 Length=3966 Score = 116 bits (128), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | ||| |||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 871 CCACCCCTGAGGCGCAAGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGAC 812 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || |||||||| || | |||||||| | || Sbjct 811 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGG 752 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| ||||| || || || || || | |||| | ||| | Sbjct 751 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATAGTATCACTCGGCTCGA 694 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || ||||| |||||||| |||||||||||| Sbjct 693 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 644 Score = 107 bits (118), Expect = 1e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||| | | || |||||||| | ||| ||| ||||| ||||| || || || Sbjct 415 CCACCCCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 356 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 355 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 296 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| ||||| || || || || || | || | || ||| | Sbjct 295 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCGCTGGGCTCCA 238 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | ||| ||||| || || ||||| |||||||| ||||||||||| || Sbjct 237 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTT 186 Score = 105 bits (116), Expect = 4e-18 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || |||| ||||| || || || ||||| Sbjct 1063 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGTTGCTTGCCAGCAAAA 1004 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | |||||||| || |||||| || || || Sbjct 1003 ATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTTATCCTGAATCTTGGCCTTCAC--AT 946 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || ||||| || | ||| ||||| || || || || ||||||| Sbjct 945 TCTCAATGGTATCACTGGGTTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 886 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 885 CAAAGATCTGCATA 872 >seq21656 Length=48212 Score = 98.7 bits (108), Expect = 6e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| ||| ||||| ||||| ||||| || ||| | ||| |||| |||||||| Sbjct 697 TGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGC 638 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || ||||| || || | |||||||| | || | || || ||||| ||||| Sbjct 637 TTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTG 578 Query 34899 TGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 || || || || || | |||| || |||||| || | || ||||| || || | Sbjct 577 GCCTTCAC--ATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAG 520 Query 34957 TGAGAGTCTTCACAAAGATCTGCAT 34981 | || |||||||| ||||||||||| Sbjct 519 TCAGGGTCTTCACGAAGATCTGCAT 495 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| || |||||||| || || || Sbjct 458 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAA 399 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || || ||||| || || || || Sbjct 398 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATT 339 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || |||||| || | ||| ||||| || || || || |||||||| Sbjct 338 TTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 279 Query 34970 AAAGATCTGCATATT 34984 |||||||||||| || Sbjct 278 AAAGATCTGCATGTT 264 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| |||||||| || || ||||| Sbjct 1142 TTCCTTCTGGATGTTGTAGTCGGACAGGGTACGACCATCCTCCAGCTGCTTGCCAGCAAA 1083 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || || ||||| ||||| || || | Sbjct 1082 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCAC--A 1025 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | || ||||| || || || || |||||| Sbjct 1024 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTC 965 Query 34968 ACAAAGATCTGCAT 34981 || ||||||||||| Sbjct 964 ACGAAGATCTGCAT 951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| || |||||||| || || || Sbjct 914 TTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAA 855 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || || ||||| || || || || | Sbjct 854 GATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTCAC--A 797 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | |||| || |||||| || | || ||||| || || || || |||||| Sbjct 796 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTACCAGTCAGGGTCTTC 737 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 736 ACAAAGATCTGCAT 723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324466716011040