Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15601 123 3e-23 seq4120 107 2e-18 >seq15601 Length=90986 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||| |||||||| || | |||||||| | ||||||||| | Sbjct 3740 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 3681 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| ||||||||||||| Sbjct 3680 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 3621 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 3620 CTACTACACGTTCTCC 3605 >seq4120 Length=36603 Score = 107 bits (118), Expect = 2e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||| || | |||| ||||| || || | |||||| || || || | ||||||||||| Sbjct 25221 ACAACATATTACCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCAGGCATCAG 25280 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTAC 19091 || || || || | ||| ||||||| |||||| || || |||||||| || ||||| || Sbjct 25281 GCCCCTCTTCTTCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAAC 25340 Query 19092 TGCTGCAAAAGCAACTAGTCTTTCTCC 19118 ||| ||||| ||||| | ||| || || Sbjct 25341 TGCAGCAAAGGCAACCACTCTCTCACC 25367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561812428135200