Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq13952 120 2e-21 seq21656 96.9 3e-14 >seq13952 Length=23644 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| ||||| ||||| |||||||| || ||||| ||||| ||||||| Sbjct 22596 ATGCTGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATG 22537 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || || || || || ||||||||||| || || ||||||||| Sbjct 22536 CTGGAACCATTGCAGGGCTCAACGTCCTGCGAATTATCAATGAGCCAACAGCTGCTGCAA 22477 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || || || Sbjct 22476 TAGCCTATGGTCTGGACAA 22458 Score = 93.3 bits (102), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 549970 AGATATAATGTCAAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGT 550029 ||| | |||||| || | |||| | || || ||| | || ||||| || ||||| Sbjct 23555 AGACAAAATGTCGAAGGGACCAGCTGTCGGAATCGATCTTGGCACCACCTACTCCTGTGT 23496 Query 550030 TGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTAC 550089 |||||| | ||| |||| || || ||||| |||||||| ||||| |||||| | || || Sbjct 23495 TGGTGTATTCCAACATGGGAAGGTGGAAATCATTGCCAACGATCAGGGTAACCGGACCAC 23436 Query 550090 TCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 ||| || || | ||||| || || || || |||||||||| || || |||| Sbjct 23435 CCCAAGCTACGTGGCCTTCACAGACACAGAGAGGTTGATTGGTGATGCTGCGAAGAATCA 23376 Query 550150 AG--CCACTGGTAATCCTACCAATAC--TATTT 550178 || || || ||||| |||||||| ||||| Sbjct 23375 AGTTGCAATG--AATCCAACCAATACAGTATTT 23345 >seq21656 Length=48212 Score = 96.9 bits (106), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || ||||| || || ||||||||||| ||| || || ||||| |||| || || Sbjct 715 CTCAGACGCAGCACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTG 656 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||| || || || || ||||| || || || ||||| ||||| ||||| ||| Sbjct 655 CGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCT 596 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 ||||| || || || || || || |||||| || ||| || | | || ||| Sbjct 595 TCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGA 536 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | || || ||||| || || || ||||| || ||||| Sbjct 535 GTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027065331368200