Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq13952 95.1 8e-14 seq25668 91.5 1e-12 seq34361 86.0 4e-11 >seq13952 Length=23644 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || || |||||||||||||| || ||||| |||||||| ||||||||||||||||| Sbjct 20862 GGAATCCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACTTTTGATATTGATGCC 20803 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 20802 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 20771 >seq25668 Length=3966 Score = 91.5 bits (100), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 || || || |||||||| || || ||| || | ||| || |||| || || | Sbjct 634 AGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAGACAGGGTGCGC 575 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 |||||| |||||||| |||||||| || | | || || ||||| || || |||||| Sbjct 574 CCATCTTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCC 515 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||||| ||||| || || | ||| ||||| Sbjct 514 TTGTCCTGGATCTTGGCCTTCACATTCTCAATGTTATCACTGGGTTCAACTTCCAGGGTG 455 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| ||||| || || Sbjct 454 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 420 Score = 91.5 bits (100), Expect = 1e-12 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| |||||||| ||||||||||| || | || || || || ||||| || ||||| Sbjct 1028 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGAATGCCCTCCTT 969 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| || ||| ||||| |||||| || || | ||| ||||| || Sbjct 968 ATCCTGAATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCAACTTCCAGGGTGAT 909 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 908 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 876 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || ||||| |||||||| || || | || || ||||| || || |||||||| Sbjct 800 ATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTT 741 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 ||| || ||||| || ||| |||||||||||| | | |||||||| || Sbjct 740 GTCCTGGATCTTGGCCTTCACATTCTCAATAGTATCACTCGGCTCGACCTCAAGGGTGAT 681 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| ||||| ||||| || || Sbjct 680 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTG 648 >seq34361 Length=24063 Score = 86.0 bits (94), Expect = 4e-11 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 474778 TCAAGCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||| || || |||||||| ||| ||| | ||||| | |||||||| | | ||||||| Sbjct 4782 TCAGGCTACAAAAGATGCTGGGCAGA-TCGCAGGCTTGAATGTTTTGAGGGTGATTAATG 4840 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAATTCTGACAAAG 474887 ||||||||||||| |||||||| |||||||| || ||| | ||||||| Sbjct 4841 AACCAACAGCAGCTGCACTTGCCTATGGTCTGGACAAGTCTGAAGACAAAG 4891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266369895142640