Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq27584 143 3e-28 seq26265 143 3e-28 seq8152 140 4e-27 seq21208 138 1e-26 seq27953 134 2e-25 seq16607 134 2e-25 seq24611 131 2e-24 seq14664 120 4e-21 seq15601 107 2e-17 seq34224 89.7 6e-12 seq4043 89.7 6e-12 >seq27584 Length=8432 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | || Sbjct 577 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGA 518 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| |||| || |||| | Sbjct 517 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCCCCAGCGATACGCTCGAAGA 458 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 457 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 398 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 397 GCACCTGCTTCAGCACCTTGTA 376 >seq26265 Length=1658 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | || Sbjct 638 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGA 579 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| |||| || |||| | Sbjct 578 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCCCCAGCGATACGCTCGAAGA 519 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 518 TGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGACGAGATGCCCGTGTCGGGGT 459 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 458 GCACCTGCTTCAGCACCTTGTA 437 >seq8152 Length=12887 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || ||||| || ||||||||||| || | || Sbjct 12327 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACAGCCGTCTGGATCTCCCGAGAAGTGA 12386 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| |||| || |||| | Sbjct 12387 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCCCCAGCGATACGCTCGAAGA 12446 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| |||||||| |||||||| Sbjct 12447 TGTCGTTGACAAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGT 12506 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 12507 GCACCTGCTTCAGCACCTTGTA 12528 >seq21208 Length=6613 Score = 138 bits (152), Expect = 1e-26 Identities = 136/176 (77%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 || |||||||| ||||||||||| || | ||| ||| ||||||||| |||||||| Sbjct 5827 AGCCGCACGGCCGTCTGGATCTCCCGGGAAGTGATGGTGGAGCGCTTGTTGTAGTGCGCC 5768 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 || || |||||| |||| || |||| ||||||||||| || |||||||||| Sbjct 5767 AGGCGCGAGGCCTCCCCAGCGATACGCTCGAAGATGTCGTTGACGAAGGAGTTCATGATG 5708 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 5707 CCCATAGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 5652 >seq27953 Length=1217 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | || Sbjct 376 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGTGA 435 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| |||| || |||| | Sbjct 436 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCCCCAGCGATACGCTCGAAGA 495 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 496 TGTCATTGACGAAGGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 555 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || |||||||| Sbjct 556 GCACCTGCTTCAGGACCTTGTA 577 >seq16607 Length=28110 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | ||||||||| || |||||||||||||| | | || Sbjct 13335 GCTTGGCCAGCTCTCCTGGGAGCAGCAGGCGCACTGCCGTCTGGATCTCGCGGGAGGTGA 13276 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| || || ||||||| |||| | Sbjct 13275 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGACGCTTCTCCAGCGATGCGCTCGAAGA 13216 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| |||| ||||||||| |||||||| Sbjct 13215 TGTCATTAACGAAGGAGTTCATGATGCCCATCGCCTTGGAGGAGATGCCAGTGTCGGGGT 13156 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 13155 GGACCTGCTTCAGCACCTTGTA 13134 >seq24611 Length=9798 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| || | | Sbjct 4146 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGAGAAGGGG 4205 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| ||||||||| |||||||||| || |||||| |||| || |||| | Sbjct 4206 AGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGAGGCCTCCCCAGCGATACGCTCGAAGA 4265 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| |||||||| Sbjct 4266 TGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGACGAGATGCCTGTGTCGGGGT 4325 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 4326 GCACCTGCTTCAGCACCTTGTA 4347 >seq14664 Length=2177 Score = 120 bits (132), Expect = 4e-21 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| |||||| ||| | || | ||| || ||||||||||| |||| ||| | Sbjct 1427 TGGCCAACTCGCCGGGCAGCAGGAGCCTCACAGCCGTCTGGATCTCCCGCGACGTGATGG 1368 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| |||||||||| || || || | ||||||| |||| |||| Sbjct 1367 TCGAGCGCTTGTTATAGTGCGCCAGGCGCGACGCTTCCCCGGCGATGCGCTCGAAGATGT 1308 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||| | |||| ||| || || ||| || || | Sbjct 1307 CGTTGACGAAAGAGTTCATGATGCCCATTGCCTTGGAGGAAATACCGGTGTCCGGATGAA 1248 Query 1254526 CCTGCTTGAGCACCTTGTAGA 1254546 ||||||| ||||||||||||| Sbjct 1247 CCTGCTTCAGCACCTTGTAGA 1227 >seq15601 Length=90986 Score = 107 bits (118), Expect = 2e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 285 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 226 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| |||||| |||||| || |||| ||| ||||| Sbjct 225 GTACTGGATGGGGAAGATGACGAAGCGGCGGGGGTTTTCCCGCAGCAGCGGTTC 172 >seq34224 Length=26671 Score = 89.7 bits (98), Expect = 6e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || || || || ||||||||| | | | || |||||||||||||||||| | || Sbjct 11318 ACAATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 11259 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || ||| |||| ||||||||| || | |||||||||| |||| | | ||| | Sbjct 11258 CTGTTGCAGGAGTCTTTGTAGAGCATGTACGGTGTGCCGGTCTCGGTCTGTGACTCGATG 11199 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 || || |||||| ||| | || ||| || | ||| | ||||||| Sbjct 11198 ATAGCATACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACACGGCCCT 11150 >seq4043 Length=2649 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 1274 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 1215 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || ||||| | ||||| |||| ||||||||| |||||||| Sbjct 1214 CATGACCTCACGCGGCCACCTCATGGCCATCACCCGCCACGGCGTCAACCGC 1163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103677711671060