Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25668 165 2e-35 seq21656 149 1e-30 seq5944 127 4e-24 >seq25668 Length=3966 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| ||||| || | || ||||| ||||| ||||| ||||| || |||| Sbjct 645 TACCACCTCTCAGGCGCAGCACAAGATGGAGAGTGGATTCCTTCTGGATATTGTAGTCAG 586 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| || ||||||||||| | || || || || || | Sbjct 585 ACAGGGTGCGCCCATCTTCCAGTTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGGG 526 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| ||||| ||||| | ||||| | Sbjct 525 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGTTATCACTGGGTTCAA 466 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || |||||||| |||| ||||| || || |||||||| Sbjct 465 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 417 Score = 149 bits (164), Expect = 1e-30 Identities = 174/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | ||||| || ||||||||||| ||||| ||||| || || ||||||| Sbjct 417 TACCACCCCTGAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAG 358 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||||||||| || || || || || || | Sbjct 357 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGG 298 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || ||||| ||||| || || | || || | Sbjct 297 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 238 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTAT 82816 | |||| || || |||||||| || | ||||| || || |||||||| |||| Sbjct 237 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATGTTTAT 183 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | |||| || ||||||||||| ||||| ||||| || || || |||| Sbjct 873 TACCACCCCTGAGGCGCAAGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 814 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || |||||||| || || || || || || || | Sbjct 813 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGG 754 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || ||||| ||||| |||||| | || || | Sbjct 753 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATAGTATCACTCGGCTCGA 694 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| || || |||||||| Sbjct 693 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 645 >seq21656 Length=48212 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | |||||| || | || || || ||||| ||||| || || || ||||| Sbjct 493 CCACCTCTGAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 434 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || ||||| ||||| ||||| || || || || || || || Sbjct 433 AGGGTGCGACCATCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 374 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || || ||||| || ||||||||||| || ||| | || || || Sbjct 373 ATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 314 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| ||||| |||||||| Sbjct 313 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 267 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| |||||| || | || || || ||||| ||||| || || || ||||| Sbjct 721 CCACCTCTCAGACGCAGCACGAGATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 662 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 661 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 602 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || ||||| ||||| || ||| | || || || Sbjct 601 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 542 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| |||| ||||| || || |||||||| Sbjct 541 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 495 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||||| || | || || || ||||| ||||| || || || || || Sbjct 1177 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1118 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| || || || || || ||||||||||| || || || || || || || Sbjct 1117 AGGGTACGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 1058 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || ||||| ||||| || ||| | || || || Sbjct 1057 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 998 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| |||| ||||| || || |||||||| Sbjct 997 TCAAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 951 >seq5944 Length=49390 Score = 127 bits (140), Expect = 4e-24 Identities = 126/163 (77%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | |||||||| || ||||| || ||||| || || ||||| Sbjct 24874 GCTTTATGGTGGTATTATGTCTCTAAAGGAATCGAATATTTGGATACAGTATTCTTCATC 24933 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| |||||||| ||||| Sbjct 24934 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTTACCATGTTC 24993 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 ||||| | ||| | || ||||| ||| |||| || || |||| Sbjct 24994 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 25036 Score = 100 bits (110), Expect = 6e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 60310 AGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATGG 60369 ||| ||||||||||||||| ||||| | || || ||||| |||||||| | |||||||| Sbjct 27267 AGCTTTTTTCGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTATGG 27326 Query 60370 TATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTAT 60429 | || || ||||| |||| ||| | || || | |||||||| || || | ||||| Sbjct 27327 ATTAGCTGCCTGTGGCCCTAAATTTCAGAAATACCTGTGGTGGAAACGATACTTGACTAT 27386 Query 60430 AATGCAATTGTTA 60442 | |||||||| || Sbjct 27387 ATTGCAATTGGTA 27399 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 27906 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTTCCCT 27965 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || || |||||||||||| Sbjct 27966 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGGTAAC 28025 Query 60563 TTCTATTTTAGAACATACAAGA 60584 ||||| | | | ||||| |||| Sbjct 28026 TTCTACTATCGGACATATAAGA 28047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981296589899020