Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq5630 167 3e-36 seq21417 123 3e-23 >seq5630 Length=28411 Score = 167 bits (184), Expect = 3e-36 Identities = 552/849 (65%), Gaps = 22/849 (3%) Strand=Plus/Minus Query 162157 AATATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTG 162216 || ||||| || || || || || || || || || || || || || || || ||| Sbjct 10782 AACATCCAGTTTAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACATGAACTCCACTG 10723 Query 162217 CACGGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAAC 162276 || || || || | || || | | ||||||||| || |||||||||||||||| ||| Sbjct 10722 CATGGTGGGTAGGGTGCACCTTTGGACACATCCCCTTCAAAGTATTGCCACTTAACAAAC 10663 Query 162277 CTAGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGG 162335 || | | || | |||||| || || | |||| |||| || | || || || || Sbjct 10662 CTGGCCAGTGCATTCATGTCAGAAACATCAAATTTGT-CACTAGAAGAAACTGCACCTGG 10604 Query 162336 AACACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTT 162395 || | || | |||||| | || ||||||| || || ||||| || || || || || Sbjct 10603 GACTTCAGGGATTCTCTGAATTGTTGCCCACAAGTACTCATCTGGGCTGTAAGTGTCTTT 10544 Query 162396 CGACCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGA 162452 | |||||| ||||||| | | |||| | | || | ||| || | Sbjct 10543 TGCCCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACGTATTCTACAAATCT 10487 Query 162453 CCTGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTC 162512 ||| | || | ||| || || ||||||||||| | || | | | ||| || | | Sbjct 10486 TCTGCTAACTACAAAATAGGCACTACCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTG 10427 Query 162513 TTTGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCT 162572 ||||||| |||||||| || | || || | | | | || || ||||||| Sbjct 10426 TTTGTCTATGCCCGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCT 10367 Query 162573 GGCCATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGG 162628 || ||| || || || | ||| || || | ||||| ||| | || Sbjct 10366 TGCTTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGG 10311 Query 162629 CCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGAT 162688 | || | | || || || | |||||||| | |||||||| |||| ||||||| Sbjct 10310 CTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATTGGAAAGTCCATGCCACAGAGAT 10251 Query 162689 TAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGG 162748 | || | |||||||| || || || ||| ||||| | | ||||| | || | Sbjct 10250 TTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTG 10191 Query 162749 CCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACAT 162808 |||| || | ||||| || || || || |||||||| | | ||| | |||||||| Sbjct 10190 CCTGCACTCTGCTCCATGAAGCATATACAACGCTCTCTAGCTGGCTGGAAATAAAGACAT 10131 Query 162809 TGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCC 162865 | || ||||| || ||||| ||| |||| || || | || | || || ||||| Sbjct 10130 TATCAAAACATGAGACTATTCCCCTCACAGC-AGCAAAAAAAGATTCTGGAGA-CTTTC- 10074 Query 162866 TATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGA 162925 | || || || | |||||| | |||||||||||| ||||| | ||| || | ||| || | Sbjct 10073 TGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATTGACCTTAGAAGTCTGTCAA 10014 Query 162926 ACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGC 162985 |||||| || || || | ||||| || || || ||||| || || || || || || | Sbjct 10013 GCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCTATTGGAAATTCTGCTTCTTCAC 9954 Query 162986 GACTGAGAG 162994 ||||||| Sbjct 9953 TGCTGAGAG 9945 >seq21417 Length=84033 Score = 123 bits (136), Expect = 3e-23 Identities = 454/702 (65%), Gaps = 13/702 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || ||||||| |||| | || | |||| Sbjct 81809 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 81868 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 81869 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCGGCCAGAAGAGCA 81928 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||| | || || ||| Sbjct 81929 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAAGGAAAGGTAAAAT 81988 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| | | || |||| | ||| | ||| ||||| | | | Sbjct 81989 TTGCAAGTGGAGATAGTTG--GAATCAAGTTTTTATCATTGACATAGTCTCCAAAGGCTT 82046 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 || || || || || |||| ||| || ||||| ||| || || || || | Sbjct 82047 GTCCATAAGTGTGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCA 82105 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || || |||||| || || || ||||| || || || || ||| || || Sbjct 82106 TGCTCAGGGTTCCAGTTACTTACAACCCAACAGACCAAGTTTTCCTTACTTGGCAC---- 82161 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | ||| | | | | | || | | | | ||||| ||||| |||||||| || Sbjct 82162 TTCAAATGTAAAGGAACTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATATCTGA 82221 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGC 177420 || || | ||| || | || || || || |||| ||| || || | ||| || | Sbjct 82222 ATCACGCCGGTAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG- 82280 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || || || ||||||||||| |||||||| || || | ||| |||| || | Sbjct 82281 TGTGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGCT 82340 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| || |||| || || || ||||| |||| || || |||| || || Sbjct 82341 GAGGTAAGTTAGTCAGATCCCAGCTAATATCCCTGTGATGAATGAGAACAGCATGGGATT 82400 Query 177541 TGTAATAAACAGATCTGTCTACGGTAACGTGACACGCACGTATGTTAAATCTGGAGCTAC 177600 ||| ||| | || | ||||| || | || ||| || | || || || | | | Sbjct 82401 TGTTATATAGTGAGCGGTCTATAGTCAGATGGCACCCATGGATATTGAACATTGTTTGGC 82460 Query 177601 ACGCATTTAGATCAAATGGGTGGCCGTAGGGCCACGTCCAGA 177642 | | |||||||||||| || || | ||||| ||||| Sbjct 82461 AGGATGTTAGATCAAATGTTTGACCAAATGGCCAAACCCAGA 82502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578127021728000