Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq34224 105 6e-18 seq21656 87.8 2e-12 seq25668 84.2 2e-11 >seq34224 Length=26671 Score = 105 bits (116), Expect = 6e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | ||||||||||||||||| ||| |||| || ||||| ||| Sbjct 11324 TACTCCACAATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTG 11265 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 || |||| ||||| | ||||||| |||||||||||||| |||||||||| Sbjct 11264 CTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGTGTGCCGGTCTCG 11214 >seq21656 Length=48212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || || || || ||||||||||| || ||| || | Sbjct 481 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 422 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||| | |||| || | ||| || || || || ||||||||||| Sbjct 421 TCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 362 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| |||| | ||| | || || | ||||| || || | || | Sbjct 361 TCCTGGATTTTTGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATG 302 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || |||||||| || || | || ||||||||| Sbjct 301 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 266 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || || || || ||||||||||| || ||| || | Sbjct 937 CGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGACCA 878 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||| | |||| || | ||| || || || || ||||||||||| Sbjct 877 TCTTCAAGCTGTTTACCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTG 818 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| |||| | || | || || | ||||| || || | || | Sbjct 817 TCCTGGATTTTTGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATG 758 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || ||||||||||| || || | || ||||||||| Sbjct 757 GTCTTACCAGTCAGGGTCTTCACAAAGATCTGCATG 722 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| || | ||| | | | || || || || |||||||||||| || |||||| Sbjct 1169 CAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTACG 1110 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||| || ||||| || || | | |||| || | ||| || || || || |||||||| Sbjct 1109 ACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTC 1050 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || |||| | || | || || | ||||| || || | || Sbjct 1049 TTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGT 990 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | ||| ||||||||| Sbjct 989 GATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 950 >seq25668 Length=3966 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||| ||||| || | | || || || || ||||||||||| || ||| ||| Sbjct 860 GCGCAAGACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 801 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| ||||| || || | | | || || | ||| || || || || |||||||| || Sbjct 800 ATCTTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTT 741 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || |||| | || | |||||| ||||||| || || | || | Sbjct 740 GTCCTGGATCTTGGCCTTCACATTCTCAATAGTATCACTCGGCTCGACCTCAAGGGTGAT 681 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || || || | ||| |||||||| Sbjct 680 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476359906744800