Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq22582 116 3e-21 seq15601 104 2e-17 seq4120 91.5 1e-13 >seq22582 Length=17029 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| |||||||||| ||| Sbjct 11471 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTCAATGGTGAATTGT 11412 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 |||| ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 11411 CATGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 11352 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| ||||||||||| || || || Sbjct 11351 GCTATTCACTGCTCACTTATATGATTGCCCATGTCAC 11315 >seq15601 Length=90986 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 ||||||| || ||||| ||||| || || |||||||| |||||||| ||||| ||||||| Sbjct 1573 CAGAAGCTCGCTGTTTCTATGGCTTCCAGATTGCCATGGAAAATATACATTCAGAAATGT 1632 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||||| || || || ||||| |||||| Sbjct 1633 ACAGTCTTCTTATTGACACCTACATTAAAGAT 1664 >seq4120 Length=36603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || |||||||| |||||||||||||| ||||||| |||||||| || ||||| | Sbjct 20829 AAAATCCTTTTGATTTCATGGAAAATATTTCTCTGGAAGGAAAAACAAATTTCTTTGAGA 20770 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 | || ||| ||||||||||| | | || ||| ||||| |||||| || | Sbjct 20769 AGCGTGTTTCGGAATATCAGCGTTTCGCTGTTATGGCAGAAACAATGGACAATGTGTTCA 20710 Query 44610 CTACGGATGAAGATTT 44625 || ||||| |||||| Sbjct 20709 CTCTGGATGCAGATTT 20694 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || ||||| | || |||||||| |||||||| || || ||||| || ||||||||| Sbjct 25355 GTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 25296 Query 44195 TTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGAT 44254 | ||||| | || ||||||||||| |||| || || ||||| | || || | ||| Sbjct 25295 CTGAAGAAGAGGGGCCTGATGCCTGGGCTGACTTTCTCCAATGAACTTATTAGCAGAGAT 25236 Query 44255 GA 44256 || Sbjct 25235 GA 25234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397251680290900