Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq34224 100 4e-16 seq4120 82.4 1e-10 >seq34224 Length=26671 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 || ||||| | |||||||||||| | |||| | || || || |||| |||| ||| Sbjct 11327 GTATACTCCACAATTTCTGTACACAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 11268 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||| ||||||| | || |||||||||||||| || || || ||||| |||||| Sbjct 11267 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTACGGTGTGCCGGTCTCGGTCTGT 11208 Query 111398 GATTTGAGAATAGCCTTCCA 111417 || | || ||||| | ||| Sbjct 11207 GACTCGATGATAGCATACCA 11188 >seq4120 Length=36603 Score = 82.4 bits (90), Expect = 1e-10 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||||| | |||||||||||| ||||| || || ||||| || |||| ||||| Sbjct 25232 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCAGGCATCAGGCCCCTCTTCT 25291 Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 ||| |||| | ||||| ||| || || || || |||||||| || || || ||||| Sbjct 25292 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 25350 Query 122797 GCAA 122800 |||| Sbjct 25351 GCAA 25354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627700870128000