Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq21656 123 2e-23 seq25668 96.9 3e-15 >seq21656 Length=48212 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| || ||| | || |||||||| || || || Sbjct 722 CATGCAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTTGAGGTTGAGCCCAG 781 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || |||||| || |||||||||||||| || || || || Sbjct 782 TGACACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCA 841 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || ||||| | ||||| || ||| | || || ||||| Sbjct 842 GCAGAGGCTGATCTTCGCTGGTAAACAGCTTGAAGATGGTCGCACCCTGTCTGACTACAA 901 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| | || ||||| | | |||||||| Sbjct 902 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGAGGTGGCAT 952 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || ||||| || || || Sbjct 266 CATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 325 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || || |||||| || |||||||||||||| || || || || Sbjct 326 TGACACCATTGAAAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCA 385 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || ||||| | ||||| || ||| | || || ||||| Sbjct 386 GCAGAGGCTGATCTTCGCTGGTAAACAGCTTGAAGATGGTCGCACCCTGTCTGACTACAA 445 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| | || ||||| | | |||||||| Sbjct 446 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGAGGTGGCAT 496 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || |||||||| || || || Sbjct 950 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAG 1009 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||||||||| || || || || Sbjct 1010 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 1069 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || |||| || || ||| | ||||| ||||| Sbjct 1070 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCCGACTACAA 1129 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||| || ||| | ||| | || |||| || |||||||| Sbjct 1130 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGGC 1178 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || ||||| |||||| | || |||||||| || || || Sbjct 494 CATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAG 553 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || || || |||||||||||||| || || || || Sbjct 554 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 613 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | ||| | || || ||||| Sbjct 614 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 673 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || ||| | ||| | || ||||| || | |||||||| Sbjct 674 CATCCAGAAGGAATCCACCCTTCATCTCGTGCTGCGTCTGAGAGGTGGCAT 724 >seq25668 Length=3966 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || ||||| || Sbjct 188 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 247 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| || || || || || ||||| || ||||| || || || || Sbjct 248 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCA 307 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | || ||||| || ||||||| | ||| | || |||||||| Sbjct 308 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGATTACAA 367 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||| || || | || ||||| |||| | ||||||| || Sbjct 368 CATCCAGAAGGAATCCACTCTGCACTTGGTGCTGCGCCTCAGGGGTGGTAT 418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434689089273600