Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq22582 91.5 1e-13 >seq22582 Length=17029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||| ||||||||||| || || || || ||||| || |||||||| Sbjct 14912 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCCCCCTCCTCT 14971 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | ||| || |||| ||||| || || || ||||| | ||| ||||| |||||| Sbjct 14972 CTGGTGCTGAAACCTTGCTTATCCAGGAACTCACGTGACCCATTAGCATCCCAAATCTTC 15031 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || | |||||||| |||| Sbjct 15032 ACACCTTTTGCAGAGAGCTCTTTGG 15056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| |||||||| | || |||||||| ||||| ||| | ||||| || || || | Sbjct 15056 CCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCTAATGGGTCACGTGAGTTCC 14997 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||| |||| || ||| | | |||||||| || ||||| || || || || |||| Sbjct 14996 TGGATAAGCAAGGTTTCAGCACCAGAGAGGAGGGGGATTTGGGACCAGTTTATGGTTTCC 14937 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| |||||||| || || || Sbjct 14936 AGTGGAGGCACTTTGGAGCAGAATA 14912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448026053649600