Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq21249 152 7e-32 seq4590 114 2e-20 >seq21249 Length=26544 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| || ||||| || |||||||| Sbjct 3653 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCCGGATGCTCCTGTTTCAGG 3594 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || || |||||||| | || || Sbjct 3593 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATTAAGCCTGGG 3534 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| || ||| || | | ||||| Sbjct 3533 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 3474 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || || |||||||| || ||||||||| Sbjct 3473 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGGTACATTTCTCCATCAATCATC 3414 Query 9484 TG 9485 || Sbjct 3413 TG 3412 Score = 145 bits (160), Expect = 1e-29 Identities = 213/299 (71%), Gaps = 2/299 (1%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | |||||||| || || || ||| | |||| || ||| | | ||| Sbjct 5692 GGAAAGCTGTGAACGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 5633 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || || || | ||| || |||||||| |||||||| ||| | |||| Sbjct 5632 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAATACTCAGGGG 5573 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || ||||||| ||||| || || || || || || | ||| | || Sbjct 5572 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAAAATGGTGCTCCAATCTCCACCATTG 5513 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || || |||||||| || ||||| || | |||||||||| Sbjct 5512 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTACAGCTCC 5454 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 | ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 5453 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGT 5395 >seq4590 Length=11299 Score = 114 bits (126), Expect = 2e-20 Identities = 177/253 (70%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || ||||| || ||||| ||||| Sbjct 3559 TCACCGATGAGGATGAGACGAGCTGTCTGGAAGAGCTGCTCATCGCTCCAGGTGGGATGC 3618 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | || || || | |||||| || | ||||||| ||||||||||| Sbjct 3619 TCCCGTTTCAGTATGTCACAGACACGGTTGTGCTCACGCAGCCAGAGTGTGGCGTACATG 3678 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||||| || | ||| || || |||| || || | ||||| || | | | ||| Sbjct 3679 CAGAGCCCCGGCAGCAGCCCGAACACCTCCTGCCCTATCGCCAGCTGCTTCTCCTTGGGG 3738 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || || || |||| |||||| ||| || | || |||| | |||||| |||| || Sbjct 3739 ACAGTAGGTGGGTAGACCATGTGAACCGGGGCATCGGTGACGGTGGGGGGGTACACCTCT 3798 Query 9472 CCGTCAATCATCT 9484 || || | || || Sbjct 3799 CCATCCACCACCT 3811 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 ||||||| || || ||||| ||||||||| | ||||||||||| ||| | | || | Sbjct 897 CTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGGAGCAGATTGGGTTTCCAAGAAGCC 956 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || ||||| || ||||| || | ||| | ||||| || || || || | ||||| Sbjct 957 CCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGCTTTCCCCAAAAATACCATTGGGTT 1016 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 |||| || || | || || || | || | ||||| ||| || | |||||| || || Sbjct 1017 GGGGTTTCTCAAGCAGCAAGCCTGGATAGAACTCCAGAGCGTCAATGTCTCCATACAGCT 1076 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 | ||||| || || |||| | ||||||| Sbjct 1077 CTTCCAGTTCTGCCGCTTTCTCTTCCTCTCCTG 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716498826707200