Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nestor_20notabilis_20[refseq_20GCF_5F000696875.1_202014-06-05] 42,180 sequences; 1,053,559,886 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq21656 141 2e-28 seq25668 102 2e-16 >seq21656 Length=48212 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || |||||||| ||||| || || ||| Sbjct 270 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGA--GCCCAGTG 327 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || || || ||| || |||||||||||||| || || || ||||||| Sbjct 328 ACACCATTGAAAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 387 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || |||||||| |||||||| | || || | || || ||| Sbjct 388 AGAGGCTGATCTTCGCTGGTAAACAGCTTGAAGATGGTCGCACCCTGTCTGACTACAACA 447 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || |||||||| || | |||||| Sbjct 448 TCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGA 488 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || ||||| || || ||| Sbjct 726 CAGATCTTTGTGAAGACCCTGACTGGTAAGACCATCACTCTTGAGGTTGA--GCCCAGTG 783 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||| || |||||||||||||| || || || ||||||| Sbjct 784 ACACCATTGAGAATGTGAAGGCAAAAATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 843 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || |||||||| |||||||| | || || | || || ||| Sbjct 844 AGAGGCTGATCTTCGCTGGTAAACAGCTTGAAGATGGTCGCACCCTGTCTGACTACAACA 903 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || |||||||| || | |||||| Sbjct 904 TCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTCAGA 944 Score = 132 bits (146), Expect = 1e-25 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 498 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGTG 555 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || || || ||||||| Sbjct 556 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 615 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||||||| | || || | || || ||| Sbjct 616 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAACA 675 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||||| || || ||||| || || | || ||| Sbjct 676 TCCAGAAGGAATCCACCCTTCATCTCGTGCTGCGTCTGAGA 716 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| || ||||| || || ||| Sbjct 954 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGTG 1011 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| |||||||||||||| || || || ||||||| Sbjct 1012 ACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCAGC 1071 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || |||| || ||| Sbjct 1072 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGTCGTACCCTGTCCGACTACAACA 1131 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || || |||||||| Sbjct 1132 TCCAGAAGGAATCCACCCTCCATCTTGT 1159 >seq25668 Length=3966 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || || || || || || |||||||| || || ||| | || Sbjct 876 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAACCCAGTGAT 935 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||||||||| || || || || || || |||||||| Sbjct 936 ACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGCATTCCACCAGACCAGCAG 995 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || || || || || |||||||| | || || | || || ||| || Sbjct 996 AGGCTGATTTTTGCTGGCAAGCAACTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 1055 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || |||||||| || | || ||| Sbjct 1056 CAGAAGGAGTCCACCCTCCATCTTGTGCTGCGCCTGAGA 1094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203080666042920