Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq4557 91.5 2e-13 >seq4557 Length=5370844 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 145731 GATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTA 145790 |||||||| || || || || |||| ||||| | |||||| || ||||| || || Sbjct 893849 GATGAAGTAGCCTACCTTTAGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATA 893908 Query 145791 GCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCA 145850 |||||| || ||||| ||||| || || ||||| || || || | ||| || || ||||| Sbjct 893909 GCTGGCAATATTGAAAGGCACTCCTAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCA 893968 Query 145851 GGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || | || || || ||||||||||| ||| ||||| || |||| ||||| Sbjct 893969 AGACAATTCACCATTTAGAACATAGAACTGGCAAAGGGCATGGCATGGAGGCAAAGCCAT 894028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589637524702200