Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1472 161 1e-34 seq5144 116 5e-21 >seq1472 Length=2906624 Score = 161 bits (178), Expect = 1e-34 Identities = 203/276 (74%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||| | || | | |||||||||||| ||||||| | |||||||||||| Sbjct 129123 GGGCACGCCGTCGGGGCCGATGAGGAACTTCTCGAAATTCCAGGAGATGTCGTTGCGGCA 129182 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| || ||||| ||| |||| | ||||||| || Sbjct 129183 GACGGGGGACCAGATGATGTACTTCGGGTCAGTCATCAGCGAGGAGGGGTCGTCGTGCGG 129242 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCT 83297 ||||| |||||| ||||||| |||||| || || || | ||| ||||| |||| Sbjct 129243 GAAGGGCAGCGCCTCTTTCAGGAAGGTGAAGAGGGGGTGCGCGTTCTGC-CCGTTCACCT 129301 Query 83298 CGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCA 83357 ||||||||||||| || || ||||| |||| | | ||||| |||||||| ||||||| || Sbjct 129302 CGCACTTCTCGAACAGGATGAAGTTGGGCTTGTACCCGTTGCCAGGACGAACGTGCTCCA 129361 Query 83358 GGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 | || ||| |||||| | |||| || ||||||| Sbjct 129362 GCGAGAGCAGGATCTCCTCGTTCTTGGTATTTTCCT 129397 >seq5144 Length=955277 Score = 116 bits (128), Expect = 5e-21 Identities = 214/302 (71%), Gaps = 14/302 (5%) Strand=Plus/Plus Query 83065 CTCGATGTCGGGCTCCACGGCCAGGGTCTGGCA-GCGGTGGCTGTACCTGCGCACGGGCG 83123 || |||||||||||||| | ||| |||| |||| ||||||| | || | || Sbjct 921424 CTGGATGTCGGGCTCCAGCTGGATGGTG-GGCATGCGGGGGCTGTAGCGACGGAAAGGTT 921482 Query 83124 TGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTG 83183 || || | |||||||| ||| |||||||||||||||| | |||| ||| |||| Sbjct 921483 CCCCTTCGGGACCCACCAGGAATTTCTCGAAGTTCCAGGAGATGTCGGAGCGCTGTACTG 921542 Query 83184 GAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGCC 83242 | ||||| | || |||| ||| || || |||| | |||||| ||||| Sbjct 921543 GGCTCCAGGTGACGAAGCGGGGTTCGGCCATCAG-GTGCGCCGCCTCGTCGGCCGGCGCG 921601 Query 83243 GGCAGG---GCCTCTCGTAGGAAGGCGAAGAGCGGATG--TGCCCTTGCACCGTTGACCT 83297 |||||| |||| || ||| ||||||||| || || || ||| || ||||| |||| Sbjct 921602 GGCAGGTGAGCCT-TC--AGGTAGGCGAAGACGGGGTGGGTGTCCT-GC-CCGTTCACCT 921656 Query 83298 CGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCA 83357 |||||| | |||||| | ||||| |||||||||||| ||| || || |||| ||||| Sbjct 921657 GGCACTTTTGGAAGAGGGTGAAGTTGGGCTCGAAGCCGCCCCCCGGCCGCACGTACTTCA 921716 Query 83358 GG 83359 || Sbjct 921717 GG 921718 Score = 113 bits (124), Expect = 5e-20 Identities = 120/156 (77%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || || ||||| || ||||| || ||||| ||||||| ||| | || Sbjct 921841 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGA--TA 921898 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 | | | || |||| ||| | ||| ||||| ||||| |||||| | ||||||||||||| Sbjct 921899 GCGGGCT-TGTAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGGGACG 921957 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 | |||||||||||||| | || |||||||| |||| Sbjct 921958 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 921993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608343588832200