Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq631 167 2e-36 seq2428 147 2e-30 seq2900 125 7e-24 seq3920 93.3 4e-14 seq2998 87.8 2e-12 >seq631 Length=15915561 Score = 167 bits (184), Expect = 2e-36 Identities = 179/234 (76%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||||||||| || ||||| || ||||| || ||||| ||||||||| | || || || Sbjct 10046389 GAAAAATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTTGAGC 10046330 Query 40745 CCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 ||| ||||| | | | |||| |||||| || || | ||||| ||||| |||||| | Sbjct 10046329 CCAGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCC 10046271 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| | || |||| ||| ||||| |||||||| || | |||||||||| |||| Sbjct 10046270 GATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGAC 10046211 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||||| |||| ||||| | ||| |||| | || || ||| Sbjct 10046210 TACAACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGGC 10046157 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 10045928 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10045869 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| |||||| | || || Sbjct 10045868 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCA 10045810 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||||| ||||||||| Sbjct 10045809 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAA 10045750 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| | ||| ||||| ||||||| || Sbjct 10045749 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGG 10045702 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| | Sbjct 10046156 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10046097 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| || || | ||||| ||||| |||||| | || || Sbjct 10046096 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCA 10046038 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| || | |||||||||| ||||||||| Sbjct 10046037 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAA 10045978 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| | ||| |||| | || || ||| Sbjct 10045977 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGGC 10045929 >seq2428 Length=1050118 Score = 147 bits (162), Expect = 2e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || || || ||||| ||||||||| | || || || || Sbjct 346764 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCC 346705 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || || | ||||| || ||||| ||| | || Sbjct 346704 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 346645 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||| ||| ||||||| Sbjct 346644 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTAC 346585 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| |||||||| ||| ||||| | ||||| ||| Sbjct 346584 AACATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGTGGC 346534 >seq2900 Length=2966310 Score = 125 bits (138), Expect = 7e-24 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||||||| ||||| | |||||||| || |||| ||| Sbjct 1590175 GAGCCGCTGCTGCGGGAGAACCCCCGCCGCTTCGTCGTCTTCCCCATCCAGTACCACGAC 1590234 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 1590235 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 1590288 >seq3920 Length=14118619 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| ||||| || || || || ||| |||||||||||||| || || || ||||||| Sbjct 11386455 TGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGCTCCTTTGCTGCTATATTTT 11386396 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | ||||| ||||| || ||||||||| ||| || || || ||| | Sbjct 11386395 GGCTGAAGAAGAGGGGCCTGATGCCTGGACTGACTTTCTCCAATGAACTTATTAGCAGAG 11386336 Query 117162 ACGAGG 117167 | |||| Sbjct 11386335 ATGAGG 11386330 >seq2998 Length=790846 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || |||||| | |||||||| || || |||| ||||||||| |||||||| || | ||| Sbjct 710749 GGGATCCCCCCTGACCAGCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 710690 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 |||||| ||||||||||||||||| Sbjct 710689 ACCCTCGCAGACTACAACATCCAGAA 710664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514835651506800