Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq59554 109 1e-18 >seq59554 Length=17215544 Score = 109 bits (120), Expect = 1e-18 Identities = 105/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||| | ||||| ||||| |||||||||| |||||||| Sbjct 11139283 GCTTTTTTTGGAGCTCAGATGAATGCGTTTATTCATGTCATTATGTACATGTATTATGGA 11139342 Query 52117 ATGGCCGCTTGTGGTCCT-ATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| ||| | ||||||||| || || ||||||||||| || | || || Sbjct 11139343 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACCAT 11139401 Query 52176 AATGCAGTTGGT 52187 | |||| ||||| Sbjct 11139402 ATTGCAATTGGT 11139413 Score = 100 bits (110), Expect = 5e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 11139935 GGTGCAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCCTT 11139994 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 || |||||||| || ||| || ||| ||||| || | | ||||| | |||||||| Sbjct 11139995 CCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTCTCCTGTTTGG 11140054 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||||||| Sbjct 11140055 TAACTTCTACTATCGGACATACAAG 11140079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922509537682200