Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4036 401 4e-107 seq5288 98.7 7e-16 >seq4036 Length=7929983 Score = 401 bits (444), Expect = 4e-107 Identities = 706/1017 (69%), Gaps = 16/1017 (2%) Strand=Plus/Minus Query 107628 TACCTCAACATAACCAGAGACTGTGAGC-GCTTCAAGG---CCCAAAGGAAGTTCATACA 107683 ||||| ||||| |||| ||||| ||| ||||||||| ||| || |||||| | Sbjct 5710446 TACCTGAACATGACCAAGGACTGC-AGCAGCTTCAAGGAGACCC---GGCGGTTCATTGA 5710391 Query 107684 GTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGA 107743 |||||| ||||| | || ||| ||| |||||||| |||||||| ||||| ||||| | Sbjct 5710390 GTTCCCGCTGAGCCAGGAGGAGGAAGAGTTCCCCATCGCCTACTCCATGGTCGTCCACAA 5710331 Query 107744 GAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTG 107803 || || || | || || ||||| ||||| | | || ||||| |||||| | ||||| Sbjct 5710330 CAAAATAGAGATGTTCGAGCGGCTCCTGCGGTCTCTCTACGCCCCCCAGAACGTCTACTG 5710271 Query 107804 TGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC 107863 ||||| | || | |||||||| | | ||| | ||||| || |||||| | | Sbjct 5710270 CATCCACATTGACGCCAAGTCCCCGGCTGCCTTCCAGGAGGCCGTGCGGGCCATCGTAGC 5710211 Query 107864 CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTC 107923 |||||||||||||||||| |||| || ||| |||||| |||||||||||||| Sbjct 5710210 CTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGTC 5710151 Query 107924 CAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAA 107983 | | |||| || ||||| ||||| ||| | ||| || | |||||| | ||||||||| Sbjct 5710150 CCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGTTGCAGAGCCCTGTGCCATGGCG 5710091 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 ||| | || || || ||||| || || |||||||| ||||| || |||||||| ||| Sbjct 5710090 CTACCTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGACGAACGCCGAGATCATCCG 5710031 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 | ||| ||| || || |||| |||||| |||||||| ||| || || | ||| Sbjct 5710030 TGTCCTGAAGGTGCTGCAGGGGCGGAACAGCATGGAGTCAGAGAAGCCCTCGGCCATCAA 5709971 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGT-GACAGACACACTGTACCCTACCAGCAAGA 108162 | | |||||| |||| | | | || | | || || || |||| | | Sbjct 5709970 GCAGGAGCGCTGGCTGTACCACCACAAAGTGGGGAAGTTCATCGT--CCGGACAGCCACA 5709913 Query 108163 -TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCC 108221 ||| || || || | || | ||||||||||| || || || || | | || | Sbjct 5709912 CAGAAACTGCCGCCACCCCACAACTCTCCCATGTTCACGGGCAACGCGTACATCGCGGTC 5709853 Query 108222 TCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGG 108281 | || ||||| || || || ||||| || ||||| | | || | | || ||| Sbjct 5709852 ACGCGGGCCTTCGTGCAGCACGTCTTCGAGAACCCCACGGCGCAGCAGTTCCTCGAGTGG 5709793 Query 108282 GTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCCGT 108339 | ||| |||||||| ||||||||||| ||| ||||||||||||| | || ||| ||| Sbjct 5709792 GCCAAGGACACCTACAGCCCCGACGAGCACGTCTGGGCCACCCTCAACCGCATGC-CCG- 5709735 Query 108340 GGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCG 108399 | |||| ||| | | || | ||||| || |||| ||||||| ||| | Sbjct 5709734 GCGTGCCAGGCGCCATGCCCCAGAATGACAAGTTCCAGCTCTCGGACATGAACGCCCTGC 5709675 Query 108400 CCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCAC 108459 || | | |||||||||||||||| ||||| || ||||| ||| ||||| || | | Sbjct 5709674 CCCGCTTGGTCAAGTGGCAGTACCTGGAGGGTGACACCAGCAAGGGCGCGCCCTACCCGC 5709615 Query 108460 CCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGA 108519 ||||| | || || | | | ||| ||||||| ||||| | || |||||| ||||| Sbjct 5709614 CCTGCACCGGCCAGCACCAGCGCGCCGTCTGCATCTACGGAGTGGGCGACCTGCCCTGGA 5709555 Query 108520 TTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCC 108579 | |||||| | || ||||||||||| |||||||| ||||| | |||||| || || | Sbjct 5709554 TGCTCCAGCAGCACCACCTCTTGGCCAACAAGTTCGACCCCATGGTGGACGACGCCGCCA 5709495 Query 108580 TGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 | ||||| | || ||| |||| || || | |||| |||| || | | ||| |||| Sbjct 5709494 TCCAGTGTCTCGAGGAGCACCTGCGCCACAGGGCCCTCTACGGCAGGGGACTCTGAG 5709438 >seq5288 Length=2999883 Score = 98.7 bits (108), Expect = 7e-16 Identities = 197/288 (68%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || ||||| || || |||| ||||| || ||||| | Sbjct 1400641 TTGAGTGGGCAAAAGACACTTACAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 1400582 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | |||| || | ||| || || || ||||| | | || |||||| Sbjct 1400581 -TCCCTGAAGTGCCAGGTGCAGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATG 1400526 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || ||||| || || || Sbjct 1400525 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTGTCCAAAGGTGCA 1400466 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 ||||| |||| ||| ||| | || | | |||| ||| |||| || ||| Sbjct 1400465 CCTTACCCACCATGCAGCGGAGTTCACATTCGCTCTGTCTGTGTTTTTGGGGTGGGAGAC 1400406 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 1400405 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 1400358 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| || || || ||||| || | || Sbjct 1401230 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCGTATTCAATAGTGGTTTATCACAAA 1401171 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | || ||||||||||| | ||||| | Sbjct 1401170 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTACGCCCCTCAGAATTTTTACTGCATT 1401111 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || ||| ||||| ||||| |||| | | || || |||| || | || || Sbjct 1401110 CATGTTGATAAAAAGTCTCCAGAATCTTTTTATGCTGCTGTGAAGGGAATAGTCTCATGT 1401051 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || ||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 1401050 TTTGATAACGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGG 1400991 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 1400990 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 1400933 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | |||||||| ||||||||||| Sbjct 1400932 ACCTAATAAACCTCTGTGGCATGGACTTCCCTATAAAGACCAA 1400890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348016017254070