Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq2428 93.3 3e-14 seq631 84.2 2e-11 >seq2428 Length=1050118 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || || || ||||||||||||| | || || |||||||| || Sbjct 346559 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGC 346618 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || ||||| ||| | ||||||||| || || | Sbjct 346619 TTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTG 346678 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 346679 GCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTC 346738 Query 18303 AATGTTTTTACAAAAATTTGCATTTTTAA 18331 | || || ||||| || |||||||| || Sbjct 346739 AGGGTCTTCACAAAGATCTGCATTTTGAA 346767 >seq631 Length=15915561 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || ||||||||||||| | || | ||| Sbjct 10046173 AGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCC 10046232 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| || |||| || || || ||||| ||| | || ||||| || Sbjct 10046233 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCC 10046292 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||| | |||||| || | ||||||| | Sbjct 10046293 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 10046352 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||||| || || || || || ||||||||| Sbjct 10046353 TTGCCGGTCAGCGTCTTCACGAAGATCTGCATTTTT 10046388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379068662048475