Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3920 123 3e-23 seq2900 114 2e-20 seq3413 96.9 4e-15 seq2061 89.7 6e-13 >seq3920 Length=14118619 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || || || || ||||| ||||| ||||| | ||| | Sbjct 11386330 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11386389 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 11386390 TCAGCCAAAATATAGCAGCAAAGGAGCCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11386449 Query 33724 CAATAAGTCTCTCTCC 33739 ||| | |||||| || Sbjct 11386450 CAACCACTCTCTCACC 11386465 >seq2900 Length=2966310 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | |||||||||||| |||||||||||||||| || | || | Sbjct 1593352 CCTCATCTCTGCTGATGAGTTCGTTAGAAAAAGTGAGTCCGGGCATTAATCCTCTTTTCT 1593293 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||||| || || || || || || ||||||||||||||||| ||||| ||||| | Sbjct 1593292 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 1593233 Query 33724 C 33724 | Sbjct 1593232 C 1593232 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 1594624 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 1594565 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370 |||| || || ||||||||||| ||||| ||||| Sbjct 1594564 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 1594530 >seq3413 Length=458949 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGT 63326 ||||| ||||| ||||||||||||||||| || || | || || ||||| | || || Sbjct 397329 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 397388 Query 63327 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 || || ||||| || ||||| |||||| || |||||| | | || || ||||||| || Sbjct 397389 TCTTCTTTTCCAGTGTTCTTCTTTAAG-TCAAGGAACTCAAAGATGTCCAAATGCCATGG 397447 Query 63386 TTCCAAGTATATGGCCATAACTCCAGG 63412 |||| ||| ||||| | | | ||||| Sbjct 397448 CTCCAGGTAGATGGCAAAAGCCCCAGG 397474 >seq2061 Length=8319669 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 188494 TTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGC 188553 ||||||||||| | ||||| ||||||| || || | |||||||| || ||||||| Sbjct 7222067 TTTCTATGATGTGTCCATCGTCTTACAAGCCTTTATTCTTACTACTGCTGTATTTCTTGG 7222126 Query 188554 TCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||||| ||| ||| | || ||||||||||| ||||| ||| ||| | |||| Sbjct 7222127 ACTGACTGCATATACCTTGCAGTCAAAGAGAGACTTCAGCAAATTTGGAGCAGG 7222180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629348740160400