Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3920 111 2e-19 seq2900 86.0 6e-12 >seq3920 Length=14118619 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || || || || | ||| ||||||| || | || | Sbjct 11386330 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11386389 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || |||||||| || || |||||||||||||| | Sbjct 11386390 TCAGCCAAAATATAGCAGCAAAGGAGCCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11386449 Query 14014 C 14014 | Sbjct 11386450 C 11386450 >seq2900 Length=2966310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||||| | | ||||| || |||||||| | || |||||||| || ||||||| Sbjct 1591195 TCTCTTTAGAATCTTTTATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGT 1591136 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC-CGAG 14243 ||||||| || ||||| || ||||| || || | ||| || | ||||||||| ||| Sbjct 1591135 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCCTCTGTGATTTGTACTTCTTGAG 1591076 Query 14244 TAAA 14247 |||| Sbjct 1591075 TAAA 1591072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479370872487000