Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3920 105 6e-18 seq2900 86.0 6e-12 >seq3920 Length=14118619 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || || || || | ||| ||||||| || | || | Sbjct 11386330 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11386389 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||||||||| ||||| || || || |||||||| || || |||||||||||||| | Sbjct 11386390 TCAGCCAAAATATAGCAGCAAAGGAGCCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11386449 Query 13802 C 13802 | Sbjct 11386450 C 11386450 >seq2900 Length=2966310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/124 (76%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 13913 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 13972 ||||||||| | | ||||| || |||||||| | || |||||||| || ||||||| Sbjct 1591195 TCTCTTTAGAATCTTTTATGTAGGTGTCAATAAGAAGACTGTACATTTCTGAATGTATGT 1591136 Query 13973 TTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC-CGAG 14031 |||| || || ||||| || ||||| ||||| | ||| |||| |||||| || ||| Sbjct 1591135 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCCTCTGTGATTTGTACTTCTTGAG 1591076 Query 14032 TAAA 14035 |||| Sbjct 1591075 TAAA 1591072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478232520550200