Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq2076 152 7e-32 seq1248 107 3e-18 >seq2076 Length=3610989 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || |||||||| || ||| ||| |||||||| || ||||||| Sbjct 176272 ATGAGTCTAGTAGTTTGGAACAGTTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 176213 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || ||||| |||||||| | || || Sbjct 176212 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 176153 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| |||| || ||||||| | ||| | ||| || || | |||||| Sbjct 176152 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACATGGGGAGGG 176093 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 176092 TAGATCATCTCTGCCTGAGTGTCCTTTACCGTTGGTGGATACATTTCTCCATCAATCATC 176033 Query 9862 TG 9863 || Sbjct 176032 TG 176031 Score = 152 bits (168), Expect = 7e-32 Identities = 225/315 (71%), Gaps = 4/315 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || || || ||||| || ||| | |||| || ||| | | ||| Sbjct 178294 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 178235 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| ||||| | ||| || |||||||| || |||||||| | |||| Sbjct 178234 TATTGATTATGTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 178175 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 178174 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 178115 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || || |||||||| || ||||| || | ||| | |||| Sbjct 178114 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTAC-AAGAAGGCCTGGGTAGAGCTCC 178056 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | |||||| || || ||||| ||||||||||| Sbjct 178055 ATAGCATCAATGTCTCCATAAAGCTCTTCGAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 177996 Query 8977 -TTTATTAATaaaaa 8990 || || | |||||| Sbjct 177995 ATTGATAAGTAAAAA 177981 >seq1248 Length=7382639 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || | ||||||| || || |||||||||||||| | |||| Sbjct 5146372 TCTTAACTATCTCAAAGCCAATTGCTCCGCCAAATGTACTGGGTTTCCAGTACTCTGGGG 5146313 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || || ||||||||||| || | ||| | |||| Sbjct 5146312 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGTGAAAACGGAGCTCCTATCTCCACCATGC 5146253 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || || | ||||| |||| || || | || || || || ||||||| Sbjct 5146252 TTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 5146193 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 5146192 GAGCATCAATGTCTCCATACAG 5146171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707997347569200