Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq631 107 2e-18 seq2428 102 7e-17 >seq631 Length=15915561 Score = 107 bits (118), Expect = 2e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||||| Sbjct 10046158 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 10046217 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || |||| ||| || || || Sbjct 10046218 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGG 10046277 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | ||||||| |||||| Sbjct 10046278 ATCCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 10046335 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| ||||||||| || ||||||||||| || || || ||||||||||| Sbjct 10046336 CCTCCAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTTT 10046387 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| |||| ||||| ||||| ||||| || ||||||| Sbjct 10045696 CAGTTACCACCCCTC--AGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGT 10045753 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||||| | ||| | ||||||| || ||||| || | || |||| ||| || | Sbjct 10045754 AGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGAT 10045813 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | ||||| ||||| || || || ||| || | | | ||||||| Sbjct 10045814 CGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCT 10045871 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||| |||| ||||||||| || |||||||| || || || || |||||||| Sbjct 10045872 GGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10045928 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| ||||| ||||| || ||||||||||||| Sbjct 10045930 CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAG 10045989 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || |||| ||| || || || Sbjct 10045990 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGG 10046049 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | ||||||| |||||| Sbjct 10046050 ATCCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCAATGGTGTCGCTGGGCTCAA 10046107 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || || || || |||||||| Sbjct 10046108 CCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10046156 >seq2428 Length=1050118 Score = 102 bits (112), Expect = 7e-17 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| || | |||||| ||||||||||| || ||||||||||||| | || | || Sbjct 346549 CAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATC 346608 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || |||| ||| || || || | ||| || ||||| Sbjct 346609 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 346668 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | |||||| |||| ||||||| Sbjct 346669 CTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 346726 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 || || || ||||| || || ||||| |||||||||||| Sbjct 346727 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTTG 346765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404793976369450