Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq631 116 3e-21 >seq631 Length=15915561 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || || || | ||||| || || |||| || || || || | Sbjct 10046388 AAAAATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCC 10046329 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || ||| ||| | || | |||| || || || ||||||||||| || || ||||| Sbjct 10046328 CAGCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGA 10046269 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || | || || || || ||||| ||| | |||||| |||||| ||||||| || Sbjct 10046268 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTA 10046209 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||| || || ||||||||| | || || || |||| Sbjct 10046208 CAACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCG 10046170 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| | Sbjct 10045928 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10045869 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || |||||||| Sbjct 10045868 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCAG 10045809 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | |||||| |||||| ||||||| |||||| Sbjct 10045808 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAAC 10045749 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||||||| | || || || |||| || | || ||| Sbjct 10045748 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGGT 10045701 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || ||| | Sbjct 10046156 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10046097 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || |||||||| Sbjct 10046096 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCAG 10046037 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | |||||| |||||| ||||||| |||||| Sbjct 10046036 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAAC 10045977 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || ||||||||| | || || || |||| Sbjct 10045976 ATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCG 10045942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419423350268575