Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2428 98.7 8e-16 seq631 87.8 2e-12 >seq2428 Length=1050118 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | ||| ||| |||||| || || || ||| Sbjct 346565 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCA 346624 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 346625 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 346684 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 346685 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 346744 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 346745 TTCACAAAGATCTGCAT 346761 >seq631 Length=15915561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || || ||| || || || || ||| Sbjct 10045732 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 10045791 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || || || || || ||||| ||||| || Sbjct 10045792 GCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 10045851 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 10045852 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 10045911 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 10045912 TTCACGAAGATCTGCATG 10045929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || || ||| || || || || ||| Sbjct 10045960 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 10046019 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || || || || || ||||| ||||| || Sbjct 10046020 GCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 10046079 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 10046080 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 10046139 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 10046140 TTCACGAAGATCTGCATG 10046157 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || || ||| || || || || ||| Sbjct 10046188 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 10046247 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || || || || || ||||| ||||| || Sbjct 10046248 GCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 10046307 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 10046308 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGCGTC 10046367 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 10046368 TTCACGAAGATCTGCAT 10046384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419829455292660