Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq631 129 1e-24 seq2998 89.7 1e-12 >seq631 Length=15915561 Score = 129 bits (142), Expect = 1e-24 Identities = 169/233 (73%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || | || | ||| ||| || ||||| || |||| Sbjct 10046154 CATG-CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGT 10046212 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| || || || | || || || ||||||||||| | ||| ||| Sbjct 10046213 CGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGG 10046272 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || || ||||| || || | ||||| | | Sbjct 10046273 GGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 10046332 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || || ||||| ||||| |||||||| ||||| ||||| ||||||||| Sbjct 10046333 CAACCTCCAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATT 10046385 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| | ||| | || || | || | ||| ||| || ||||| || |||| Sbjct 10045926 CATG-CCACCTCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGT 10045984 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| ||||| || || || | || || || ||||||||||| | ||| ||| Sbjct 10045985 CGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGG 10046044 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| || || || ||||| || || | ||||| | | Sbjct 10046045 GGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCT 10046104 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| |||||||| ||||| ||||| |||||||| Sbjct 10046105 CAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10046156 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| ||| ||||| || || || | || || || ||||| Sbjct 10045737 TTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAA 10045796 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||||| | ||| ||| ||||| || || || |||||||| || || || ||||| Sbjct 10045797 GATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 10045856 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | ||||| | || || || || ||||| ||||| |||||||| ||||| || Sbjct 10045857 CTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 10045916 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 10045917 GAAGATCTGCAT 10045928 >seq2998 Length=790846 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| ||||| || || | |||| | | ||| || || Sbjct 710861 CCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCGTTGGGTTCCACCTCC 710920 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 710921 AGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAAGATCTGCAT 710964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178754266553290