Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2428 122 9e-23 seq631 109 5e-19 >seq2428 Length=1050118 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | || ||||| | ||| Sbjct 346550 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCT 346609 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||| ||||| ||||| || || Sbjct 346610 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 346669 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 346670 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 346729 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| |||| || || || || || |||||||| Sbjct 346730 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATTTT 346764 >seq631 Length=15915561 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | || ||||||| | || || ||||||||||| Sbjct 10046188 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 10046247 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| |||||| ||||| || || || || || || || || || ||| Sbjct 10046248 GCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 10046307 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || || | || | |||||||||||||| || Sbjct 10046308 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGCGTC 10046367 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 10046368 TTCACGAAGATCTGCATTTT 10046387 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | || ||||||| | || || ||||||||||| Sbjct 10045732 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 10045791 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| |||||| ||||| || || || || || || || || || ||| Sbjct 10045792 GCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 10045851 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || || | || | |||||||||||||| || Sbjct 10045852 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 10045911 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 10045912 TTCACGAAGATCTGCAT 10045928 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || |||||||| || | || ||||||| | || || ||||||||||| Sbjct 10045960 GTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCA 10046019 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| |||||| ||||| || || || || || || || || || ||| Sbjct 10046020 GCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 10046079 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || || | || | |||||||||||||| || Sbjct 10046080 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 10046139 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 10046140 TTCACGAAGATCTGCAT 10046156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499272845674200