Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq631 114 1e-20 seq2428 109 5e-19 >seq631 Length=15915561 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || || || || || || ||||| ||| | ||||| | Sbjct 10045714 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 10045773 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||||||||| || || ||||||||| Sbjct 10045774 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTG 10045833 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 10045834 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATG 10045893 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || || || ||||||||| Sbjct 10045894 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 10045929 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || || || || || || ||||| ||| | ||||| | Sbjct 10045942 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 10046001 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||||||||| || || ||||||||| Sbjct 10046002 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTG 10046061 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 10046062 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATG 10046121 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || || || ||||||||| Sbjct 10046122 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 10046157 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||||| || | || || || || || || ||||| ||| | ||||| | Sbjct 10046170 CGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCA 10046229 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||||||||| || || ||||||||| Sbjct 10046230 TCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTG 10046289 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 10046290 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATG 10046349 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 10046350 GTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 10046384 >seq2428 Length=1050118 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | ||| | || ||||| || || || ||||| ||| | |||||| | Sbjct 346547 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCA 346606 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || ||||| |||||| Sbjct 346607 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 346666 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | ||| || || | ||| | Sbjct 346667 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 346726 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || ||||| |||||||| Sbjct 346727 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 346761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475146819373200