Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq2076 143 4e-29 seq1248 102 1e-16 >seq2076 Length=3610989 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| ||||| ||| |||| || || || || ||||| || Sbjct 176272 ATGAGTCTAGTAGTTTGGAACAGTTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 176213 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| ||||||||| ||||||||||| || || |||||||| || || || Sbjct 176212 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 176153 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || || | ||| | Sbjct 176152 ACCAAACCAAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTACATGGGGAGGG 176093 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 176092 TAGATCATCTCTGCCTGAGTGTCCTTTACCGTTGGTGGATACATTTCTCCATCAATCATC 176033 Query 9967 TG 9968 || Sbjct 176032 TG 176031 Score = 138 bits (152), Expect = 2e-27 Identities = 208/296 (70%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || || || || ||||||||| || ||||| ||| | || || | Sbjct 178294 GGAAAGCAGTGAAAGGGCAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 178235 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | ||||| || || || | || || |||||||| || ||||||||| | |||| Sbjct 178234 TATTGATTATGTCAAAGCCCACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 178175 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || ||||| || || | ||| | || Sbjct 178174 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCAATCTCCACCATTG 178115 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | | ||| | |||||| || | Sbjct 178114 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTAGAGCTCCA 178055 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||| | || || || || || || || ||| Sbjct 178054 TAGCATCAATGTCTCCATAAAGCTCTTCGAGTTCAGCTGCCATTTCTTTTTCTCCT 177999 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 || || |||||||| | ||| || | | || |||| | ||| ||| | ||| Sbjct 177478 ATAGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGGAAAGTG 177419 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| ||||||| |||||||| || || || |||||||||||| Sbjct 177418 TCAGGCAGAAGTGGGTGCCAGTGGTAGAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 177359 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | || || ||||| | || | ||||||||| | Sbjct 177358 TATTGAAATTGCTGGT--TGAACAGCAGTTCAGGATCAAACTTGAGTTTGAAGTGGTAGC 177301 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | || || || || | || | ||| || || ||||| || || Sbjct 177300 CACTCAAGTGTTGCACGTAGTCCTCAATAACAATCTTGATTGTTTCTCCTGT 177249 >seq1248 Length=7382639 Score = 102 bits (112), Expect = 1e-16 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 ||| || || || || || || || | | ||||| || || ||||||||||||||| | Sbjct 5146377 TGCTGTCTTAACTATCTCAAAGCCAATTGCTCCGCCAAATGTACTGGGTTTCCAGTACTC 5146318 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 |||||||||||| ||| | | ||||| |||| ||||||||||| || | ||| | Sbjct 5146317 TGGGGAGCAGATGGGGTTTCCAAGAAGCCCCTTCAGTGAAAACGGAGCTCCTATCTCCAC 5146258 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||||| || || || || || ||| | ||||| || | | ||||| || | Sbjct 5146257 CATGCTTTCTCCAAAAATACCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAA 5146198 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| || | ||| ||||| || |||||| ||| || || |||| | ||| || Sbjct 5146197 CTCCAGAGCATCAATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCTTCCTCTCC 5146138 Query 9175 TACA 9178 | || Sbjct 5146137 TGCA 5146134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723189229737000