Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq631 183 3e-41 seq2428 132 5e-26 seq3920 87.8 2e-12 seq2900 86.0 6e-12 seq2998 84.2 2e-11 >seq631 Length=15915561 Score = 183 bits (202), Expect = 3e-41 Identities = 182/233 (78%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || ||||| || ||||| ||||||||| | || || ||| | Sbjct 10046388 AAAAATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCC 10046329 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || ||||| | | | |||| | || | || |||| ||||| ||||| || ||| ||| Sbjct 10046328 CAGCGACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCG 10046270 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | || ||| |||| || | ||| ||||| |||||||| || | |||||||||| ||||| Sbjct 10046269 ATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACT 10046210 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| |||||| | || ||||| |||||||||||| | ||||| ||| Sbjct 10046209 ACAACATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGGC 10046157 Score = 172 bits (190), Expect = 5e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 10046156 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10046097 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| |||| || Sbjct 10046096 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCA 10046038 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||||| ||||||||| Sbjct 10046037 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAA 10045978 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| | || ||||| |||||||||||| | ||||| ||| Sbjct 10045977 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGTCTCAGAGGTGGC 10045929 Score = 165 bits (182), Expect = 8e-36 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| | Sbjct 10045928 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 10045869 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| |||| || Sbjct 10045868 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCCCCCGATCA 10045810 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||||| ||||||||| Sbjct 10045809 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAA 10045750 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| |||||| | || ||||| ||||||||||| |||| || || Sbjct 10045749 CATCCAGAAGGAATCCACCCTGCACTTGGTGCTGCGCCTGAGGGGTGG 10045702 >seq2428 Length=1050118 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 346764 AAAATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCC 346705 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || |||||| |||| Sbjct 346704 AGTGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGAT 346645 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | ||||| ||| ||||||| Sbjct 346644 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACTCTCTCCGACTAC 346585 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| ||||| | || |||||| | |||||||| | || || ||| Sbjct 346584 AACATCCAGAAGGAGTCCACCCTGCATCTTGTGCTGCGCCTCAGGGGTGGC 346534 >seq3920 Length=14118619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| ||||| ||| |||||||| || ||||| ||||| | || | Sbjct 11386330 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 11386389 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || |||||||||||||| ||| || || || || || | Sbjct 11386390 TCAGCCAAAATATAGCAGCAAAGGAGCCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 11386449 Query 133037 CCACCA 133042 | |||| Sbjct 11386450 CAACCA 11386455 >seq2900 Length=2966310 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 ||||||||| | ||||| || || |||||||| || |||||||| ||| ||||| Sbjct 1590288 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 1590229 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTCC 133509 || || ||||| || | || || ||||||||||| || |||| |||||||||| Sbjct 1590228 GTACTGGATGGGGAAGACGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTCC 1590174 >seq2998 Length=790846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| |||||||| || | ||||||||| |||||||| || | ||| Sbjct 710749 GGGATCCCCCCTGACCAGCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAGGATGGCCGC 710690 Query 38406 ACCCTCAACGACTACAACATCCA-AAAGGAAGC 38437 |||||| |||||||||||||| ||||| ||| Sbjct 710689 ACCCTCGCAGACTACAACATCCAGAAAGGTAGC 710657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499800452611200