Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4031 91.5 1e-12 seq3968 87.8 1e-11 >seq4031 Length=5211696 Score = 91.5 bits (100), Expect = 1e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||||| |||||||||||||| || ||| |||| | || || ||||| || |||| Sbjct 1532930 CAAAAACTGTATTGGTTGGATTCATCGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 1532989 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 1532990 TCTCTGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 1533049 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | ||||| || || || | ||| | || || ||||| | | || || || | ||| | Sbjct 1533050 TGATTTCCACCTTCCCGTGTTGGAACACGCCAACACAGGAATAGGTGGTGCCAAGATCGA 1533109 Query 518703 TACCAATAGC 518712 | || | ||| Sbjct 1533110 TTCCGACAGC 1533119 >seq3968 Length=154592 Score = 87.8 bits (96), Expect = 1e-11 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | |||||||| ||||| || || ||| | ||| | | | ||||| Sbjct 74690 TGTTGTGGCTACAGTGGCATTTGGAATGGGCATCAACAAAGCAGATATCCGGATGGTTAT 74631 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||| |||||||| || ||||| ||||| Sbjct 74630 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTACCAAGAAATCGGGAGAGCTGGTCG 74571 Query 367113 TGATGG 367118 ||||| Sbjct 74570 CGATGG 74565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3777867084725830