Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1907 300 2e-76 seq4031 228 1e-54 >seq1907 Length=2255496 Score = 300 bits (332), Expect = 2e-76 Identities = 1038/1600 (65%), Gaps = 38/1600 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| ||||| ||||| ||||| |||||||| || || | Sbjct 1282770 TTCATCCTCCGCTTTGTACTTCTCCGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 1282712 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||||||||| || || || ||||| | ||||||| | ||| || Sbjct 1282711 TAAGGCGACCCTTATCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 1282652 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | || || || |||| |||||||| ||||||| || || | || | || || || Sbjct 1282651 CGGCGCTGACGTTCAGGATACCATTGGCATCAATGTCAAAAGTGACCTCGATCTGGGGGA 1282592 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| |||||| | || || || |||| ||| Sbjct 1282591 CTCCGCGGGGTGCCGGGGGGATGCCCGTTAGGTCAAATTTGCCCAGCAAGTTGTTGTCCT 1282532 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGT 6865 ||| | | | || || || || || | | | ||| | | || || ||| Sbjct 1282531 TCGTCATAGCCCTCTCGCCCTCGTACACCTGGACCAGGA-CGCTGCTCTGGTTGTCTGAG 1282473 Query 6866 GCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGG 6925 || | |||| | || || || | ||||| || || || | | || | | | Sbjct 1282472 TAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGCG 1282413 Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | ||||| || || | || || |||||||| || || ||||| || | | Sbjct 1282412 GTCATCACTCCACCAGCTGTCTCTATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGC 1282353 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || || || || || | || ||| | | || || ||||| || | || ||| Sbjct 1282352 AGATCCTGCACGTTCTCAGACTTGTCTCCCATGAGTATAGCTGCTTGCACAGCAGCGCCG 1282293 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||| ||||| || | || || || ||||| || || || | ||| Sbjct 1282292 TAAGCAACAGCCTCATCAGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 1282233 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || || | ||| || || ||||| || || || ||||| |||| ||||| || | Sbjct 1282232 TGTAGCAGCTTTTGGATCTTGGGGATACGGGTAGAGCCACCCACCAGCACGATCTCCTGG 1282173 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || || | ||| | || || || | || || || || |||| Sbjct 1282172 ATCTGGCCCTTGTCTAGCTTAGCATCGCGCAGAGCCTTCTCCACTGGCTCCAGGGTGCCG 1282113 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | || | ||| |||||||| || ||||| |||||||| || ||||| ||| Sbjct 1282112 CGGAAGAGATCGGCATTCAGCTCCTCAAAGCGGGCACGAGTAATGGAGGTGTAGAAGTCA 1282053 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAACGTT 7342 | ||| ||||| | || || || |||||| | | ||| ||| ||||| | || Sbjct 1282052 ATGCCCTCGTAGAGGGAGTCGATCTCAATGCTAGCTTG---CGTGGAAGAGCTGAGGGTG 1281996 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 ||||| || | |||||| ||||| || | || | | || ||| ||| || | ||| Sbjct 1281995 CGCTTCGCCCTCTCACAAGCCGTACGCAGTCGCCTCACTGCTCGCTTGTTGCCAGCAATG 1281936 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCTCGAATCG 7459 || ||| || ||||| || || |||| || | || || | | | | | || Sbjct 1281935 TCACGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT---GTCA 1281879 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||||| || || || || || || | || || |||||||| || | Sbjct 1281878 AAGTCCTCGCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAGATGCCATCC 1281819 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | | | || ||||| || || || || |||| |||||| ||||| |||||| Sbjct 1281818 TCAATGGTAAGGATGGACACATCGAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACGTTC 1281759 Query 7580 GTATCGTC-GTCTTTG-----TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | ||| | | | | ||||| || | || || || ||||| || ||||| || Sbjct 1281758 TTCTCGCCAGCCCGCGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGCCGTGGGC 1281699 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || |||||||| | ||| ||||||| || || | || ||||| || || || Sbjct 1281698 TCGTTGATAATACGCATCACGTTAAGGCCAGTGATGGTGCCGGCGTCTTTGGTGGCCTGG 1281639 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || || ||||| ||||| || || || || | ||| || | | || || || Sbjct 1281638 CGCTGGGAGTCGTTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGCACCTTGCACCCC 1281579 Query 7754 AGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCC 7813 ||||| | || ||||| || ||||| |||||||| ||||| || ||||| || | Sbjct 1281578 AGATAGGCCTCAGCGATCTCCTTCATCTTGGTAAGGACCATGGAGCTGATCTCCTCCG-G 1281520 Query 7814 GCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACC 7872 | | | || ||| | ||||| || | || || | | | |||| || || ||| Sbjct 1281519 GAAGAAGGTCTTCATCTCACCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACT 1281466 Query 7873 GGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAA 7929 | | ||| | | | ||| | ||||| || ||| ||| |||| | Sbjct 1281465 CTCGTTCACCACACGGAAGGGCCAGTGCTTCATGTCAGATTGCACCGTGGGGTCATCGTA 1281406 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| | ||||| |||||||| ||||| || | ||||| | |||||||| || || Sbjct 1281405 CTTGCGGCCGATGAGACGCTTGGCATCGAAGATGGTGTTGGTAGGGTTCATAGCCACCTG 1281346 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 |||||| || || || ||||| || || || | || || || || || || | ||| Sbjct 1281345 GTTCTTGGCAGCATCACCGATGAGGCGCTC---TGTGTCGGTGAAGGCCACATA-GCTGG 1281290 Query 8050 G-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || || || || || |||||||| || || || || || | | | || |||||| Sbjct 1281289 GCGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGAAAGACGC 1281230 Query 8109 CGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | ||||| || ||||| || || || || || |||||||| Sbjct 1281229 CCACGCAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 1281190 >seq4031 Length=5211696 Score = 228 bits (252), Expect = 1e-54 Identities = 378/543 (70%), Gaps = 6/543 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| ||||| || Sbjct 1531288 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 1531347 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| |||| ||||| Sbjct 1531348 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACGATG 1531407 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | ||| || |||| || | ||||| || | ||||| ||||| |||| Sbjct 1531408 TCATGGATCTGCGACTTGTCGAGTTTGGCATCTCGCAGGGCCTTTTCCACAGGATCCAGG 1531467 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 ||||||||| || | ||| || ||||| || || | |||||||||||| ||| Sbjct 1531468 GTGCCACGGAACAAATCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTGTAG 1531527 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | |||||||||||||| | | || | ||||||| | Sbjct 1531528 AAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTCGAAGACAGA 1531587 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| ||||| ||||| || || | ||||||| || | | ||| || Sbjct 1531588 GTACGCTTTGCACGCTCGCACGCGGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCGCTG 1531647 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| || || || || || || | ||||| || || | | | | Sbjct 1531648 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTT---G 1531704 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| ||||||||||| || || || || || | ||| || |||||||| || Sbjct 1531705 TCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCA 1531764 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | | | ||| ||||| || || ||||| ||||||||||| || || ||| Sbjct 1531765 TCTTCAATAGTCAGAATCGACACATCGAAGGTGCCACCTCCCAGGTCAAAGATAAGAACG 1531824 Query 7577 TTC 7579 ||| Sbjct 1531825 TTC 1531827 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634659983326200