Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2428 129 1e-24 seq631 120 7e-22 >seq2428 Length=1050118 Score = 129 bits (142), Expect = 1e-24 Identities = 165/226 (73%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || ||||| || || |||||||| || || || ||||| |||| ||||| Sbjct 346541 CTGAGGCGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTG 346600 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| |||||||| || || ||||| || | || || || || ||||||||| Sbjct 346601 CGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCT 346660 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096 || ||||| || || || ||| || |||||||||||||| ||| || || || Sbjct 346661 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCC 346717 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| | ||||| || |||| || || || || | ||||||| Sbjct 346718 AGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATTT 346763 >seq631 Length=15915561 Score = 120 bits (132), Expect = 7e-22 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || | ||| || ||||| || || || || ||||| |||| || || Sbjct 10046163 TCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 10046222 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || || || || || || || Sbjct 10046223 GCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCC 10046282 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||||||||||||||| || || || || Sbjct 10046283 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAG 10046342 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| | ||||| || |||| || || ||||| | ||||||| Sbjct 10046343 GGTGATGGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATTT 10046386 Score = 116 bits (128), Expect = 8e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || || | ||| || ||||| || || || || ||||| |||| || || Sbjct 10045935 TCTGAGACGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGT 10045994 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||| || |||||||| || |||||||| || | || || || || || || || Sbjct 10045995 GCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCC 10046054 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||||||||||||||| || || || || Sbjct 10046055 CTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAG 10046114 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || |||| || || ||||| | ||||| Sbjct 10046115 GGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10046156 Score = 111 bits (122), Expect = 3e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||| || || || || ||||| |||| || || | |||||| || ||||| Sbjct 10045725 GTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTG 10045784 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || | || || || || || || || || ||||| || || || Sbjct 10045785 CTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTT 10045844 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||||||||||||| || || || ||||| | ||||| || || Sbjct 10045845 GGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGT 10045904 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 10045905 CAGGGTCTTCACGAAGATCTGCAT 10045928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108635011798685