Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq631 118 7e-22 seq2428 96.9 2e-15 >seq631 Length=15915561 Score = 118 bits (130), Expect = 7e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34752 TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCC 34811 || || ||||||| | || |||||||| | ||| ||| ||||| ||||| ||||| Sbjct 10045699 TTACCACCCCTCAGGCGCAGCACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCG 10045758 Query 34812 GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGC 34871 || ||| | || |||| |||||||| || || || || || || | ||||| || | Sbjct 10045759 GAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGG 10045818 Query 34872 GGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCA 34931 || | |||||||||||| ||||| |||||| | || | || | || |||| Sbjct 10045819 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCA 10045878 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 10045879 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 10045928 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 10046176 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCC 10046235 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || | ||||| || | || | |||||||||||| Sbjct 10046236 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGG 10046295 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | || |||||| || | ||| ||||| || Sbjct 10046296 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 10046355 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || || || |||||||| ||||||||||| || Sbjct 10046356 CCGGTCAGCGTCTTCACGAAGATCTGCATTTT 10046387 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 10045948 ACCAAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCC 10046007 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || | ||||| || | || | |||||||||||| Sbjct 10046008 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGG 10046067 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || | || |||||| || | ||| ||||| || Sbjct 10046068 ATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTG 10046127 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 10046128 CCGGTCAGGGTCTTCACGAAGATCTGCAT 10046156 >seq2428 Length=1050118 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| |||||||| || || ||||| Sbjct 346571 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 346630 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || | || | || |||||||| ||||| || || || Sbjct 346631 ATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCAC--AT 346688 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | ||| ||||| || || || || ||||||| Sbjct 346689 TCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 346748 Query 34969 CAAAGATCTGCATATT 34984 ||||||||||||| || Sbjct 346749 CAAAGATCTGCATTTT 346764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324397972310040