Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4031 98.7 6e-15 >seq4031 Length=5211696 Score = 98.7 bits (108), Expect = 6e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 1530363 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 1530304 Query 476150 AATGGTATTCTTAATGTTACTGCT 476173 ||||| || || ||||| ||||| Sbjct 1530303 AATGGCATCCTGAATGTGTCTGCT 1530280 Score = 91.5 bits (100), Expect = 1e-12 Identities = 220/328 (67%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 || || || || ||||| ||||| |||| ||||| || || | | | ||||| || Sbjct 1531613 ACCGCGTGCGAGCGTGCAAAGCGTACTCTGTCTTCGAGCACGCAGGCCAGTATTGAAATT 1531554 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 1531553 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 1531494 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | ||||| | || | || | || || || ||| | | || ||||| | Sbjct 1531493 CTGAATGCTGATTTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGAGATGCC 1531434 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| ||||| || || ||||||| || || || || || || || || | || ||| Sbjct 1531433 AAACTCGACAAGTCGCAGATCCATGACATCGTGCTGGTTGGTGGGTCTACTCGTATCCCA 1531374 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || || | || || || ||| || | || | || | | Sbjct 1531373 AAGATTC-AGAAACTGCTG-CAGGATTTCTTCAACGGCAAAGAGCTGAACAAGAGCATCA 1531316 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 1531315 ATCCTGATGAAGCTGTGGCTTATGGTGC 1531288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265624597089140