Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq5288 239 5e-58 seq4036 161 1e-34 >seq5288 Length=2999883 Score = 239 bits (264), Expect = 5e-58 Identities = 602/909 (66%), Gaps = 7/909 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 1400306 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 1400365 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 1400366 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCCACCCCAAAAA 1400422 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || ||||| || ||| |||| || ||||| | || ||||| | ||| | Sbjct 1400423 CACAGACAGAGCGAATGTGAACTCCGCTGCATGGTGGGTAAGGTGCACCTTTGGACACAT 1400482 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || |||| Sbjct 1400483 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 1400542 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 1400543 ACTTGT-CACTAGAAGAAACTGCACCTGGCACTTCAGGGATTCTCTGAATTGTTGCCCAC 1400601 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||| | ||| ||| Sbjct 1400602 AGGTACTCATCTGGGCTGTAAGTGTCTTTTGCCCACTCAATGAATTTAAGTATTTTGCTG 1400661 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | || || | |||| | || ||||| || || || || || || Sbjct 1400662 CTTTCTAATATGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 1400721 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 ||||| | | ||| || | |||||| || ||||| | || | Sbjct 1400722 ATCGGAGTACTGAGAGGTGGTAGTTTTTTGTCTATGCCTGTGTTCTTTATTTTACCATCA 1400781 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || |||||||||| || || || | ||||| ||| || || Sbjct 1400782 ATAATCTCATGGTGCTTCTTCCATCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 1400841 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 1400842 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 1400901 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 || ||||| | || || | |||||| | ||| ||||| || | || || || Sbjct 1400902 GGGAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 1400961 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 1400962 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 1401021 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||||||||| ||||| || || |||||| ||| | ||| | Sbjct 1401022 AACTGGCTGGAAATAAAGACGTTATCAAAACATGAGACTATTCCCTTCACAG-CAGCATA 1401080 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| || || || | ||| || | |||||||| |||||||| Sbjct 1401081 AAAAGATTCTGGAGACTTTTTATCAACATGAATGCAGTAAAAATTCTGAGGGGCGTAGAT 1401140 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || || || || || Sbjct 1401141 TGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAATACGCAAT 1401200 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 1401201 TGGAAATTC 1401209 >seq4036 Length=7929983 Score = 161 bits (178), Expect = 1e-34 Identities = 611/946 (65%), Gaps = 46/946 (5%) Strand=Plus/Plus Query 160044 CTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAAT 160103 ||||| ||||| || || || ||||| |||| |||| |||| || |||||| Sbjct 5709464 CTGTGGCGCAGGTGCTCCTCGAGACACTGGATGGCGGCGTCGTCCACCATGGGGTCGAAC 5709523 Query 160104 TTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAAC 160163 || || || || || ||||| | ||| || |||||| ||| ||| || ||| | Sbjct 5709524 TTGTTGGCCAAGAGGTGGTGC---TGCTGGAGCATCCAGGGCAGGTCGCCCACTCCGTAG 5709580 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 | |||||||| || |||| |||| |||| |||||||| | || || || | Sbjct 5709581 ATGCAGACGGCGCGCTGGTGCTGGCCGGTGCAGGGCGGGTAGGGCGCGCCCTTGCTGGTG 5709640 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCG 160283 ||||| || |||||||||||| || || | || | || | |||||| ||| | | Sbjct 5709641 TCACCCTCCAGGTACTGCCACTTGACCAAGCGGGGCAGGGCGTTCATGTCCGAGAGCTGG 5709700 Query 160284 TATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || |||| | ||| || || ||||||||||| || | ||||||||||| Sbjct 5709701 AACTTGTCATTCTGGGGCATGGCGCCTGGCACGCCGGGCATGCGGTTGAGGGTGGCCCAG 5709760 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCGATTAACCT 160402 | ||| |||||||||||||| |||||||| | ||| || | ||||| || || | | Sbjct 5709761 ACGTGCTCGTCGGGGCTGTAGGTGTCCTTGGCCCACTCGAGGAACTGCTGCG----CCGT 5709816 Query 160403 G----TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGG 160458 | || || || ||||| ||| ||| | || || | | ||||||| |||| | Sbjct 5709817 GGGGTTCTCGAAG-ACGTGCTGCACGAAGGCCCGCGTGACCGCGATGTACGCGTTGCCCG 5709875 Query 160459 AGAATATCGG-----TATGGGTATAGGCGGC-GTGTCTTTGT-CCTGACCGGTGTTAGAC 160511 ||| || || | |||| |||||| || ||| ||| ||| |||| Sbjct 5709876 TGAACATGGGAGAGTTGTGGG--GTGGCGGCAGTTTCTGTGTGGCTGTCCGG-------- 5709925 Query 160512 ACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTG--TGCGGTGGCA 160569 || | ||| ||| ||| | | | ||| | || |||| || | || Sbjct 5709926 ACGATGAACTTCCCCACTTTGTGGTGGTACAGCCAGCGCTCCTGCTTGATGGCCGAGGGC 5709985 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | | || | ||| | ||||| || | ||| ||||| || |||||| Sbjct 5709986 TTC--TCTGACTCCATGCTGTTCCGCCCCTGCAGCACCTTCAGGACACGGATGATCTCGG 5710043 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 ||||||||||| || || ||||| ||||| ||| | | ||| |||| || Sbjct 5710044 CGTTCGTCTTGATGGGGAAATCGGTGCCGCAGGTGTTGAGGAGGTAGCGCCAT----GGC 5710099 Query 160690 TCAGGTC-GTG---CAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAA 160745 |||| | || ||||||| |||||| || | || ||||||| ||| |||||| Sbjct 5710100 ACAGGGCTCTGCAACAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAG 5710159 Query 160746 GCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATT 160805 || || || || || || || || ||||||||||| || ||| || | ||||| Sbjct 5710160 GCATAGACCACCTTTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTACGATG 5710219 Query 160806 CCCACCACCGCCAGAAAGAA--CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACA 160863 || ||| ||| ||| || | | ||| ||| | ||| | ||| || | Sbjct 5710220 GCCCGCACGGCCTCCTGGAAGGCAGC--CGGGGACTTGGCGTCAATGTGGATGCAGTAGA 5710277 Query 160864 GGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGA 160923 |||||| || ||||||| | || || | || ||||||||||||||| || | |||| Sbjct 5710278 CGTTCTGGGGGGCGTAGAGAGACCGCAGGAGCCGCTCGAACATCTCTATTTTGTTGTGGA 5710337 Query 160924 TCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAG 160969 || || |||||||| || || ||||| |||||| | ||||| Sbjct 5710338 CGACCATGGAGTAGGCGATGGGGAACTCTTCCTCCTCCTGGCTCAG 5710383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576789496381800