Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2900 86.0 1e-11 >seq2900 Length=2966310 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 49865 TTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGC 49924 ||| ||| |||||| | ||| |||||||||||||| || || |||||||| |||||||| Sbjct 1593333 TTCGTTAGAAAAAGTGAGTCCGGGCATTAATCCTCTTTTCTTCAGCCAAAAAATTGATGC 1593274 Query 49925 AAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTA 49971 |||| | ||||||||| || || || || ||||| |||| || Sbjct 1593273 AAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCTACTA 1593227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983728794074250