Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2217 232 1e-54 seq1017 232 1e-54 seq2050 188 1e-41 seq5119 181 2e-39 seq2189 152 8e-31 seq2900 109 9e-18 >seq2217 Length=6423182 Score = 232 bits (256), Expect = 1e-54 Identities = 205/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 6396034 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 6396093 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 6396094 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 6396153 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 6396154 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 6396213 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 6396214 TGATGCTCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 6396273 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 6396274 ACACGTAGATCGAGTA 6396289 Score = 232 bits (256), Expect = 1e-54 Identities = 205/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 6404032 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 6403973 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 6403972 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 6403913 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 6403912 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 6403853 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 6403852 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 6403793 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 6403792 ACACGTAGATCGAGTA 6403777 Score = 223 bits (246), Expect = 5e-52 Identities = 203/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 6360529 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 6360588 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 6360589 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 6360648 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| |||||||||| || ||||||| Sbjct 6360649 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGAGCAAGGAGTTCA 6360708 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 6360709 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 6360768 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 6360769 ACACGTAGATCGAGTA 6360784 Score = 199 bits (220), Expect = 6e-45 Identities = 200/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCG--TGCCTGGCCAGTTCGCCGCG 1485527 ||||||||||||| |||||||| ||| ||| ||||| ||| ||||||| |||||| | Sbjct 6383416 TGTACTTGGTGACAGCCTTGGTGCCCG--GAGGCGGCGCGTGCTTGGCCAGCTCGCCGGG 6383359 Query 1485528 CATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT 1485587 || | || |||||||| ||||||||||| || | | ||| ||| ||||||||| Sbjct 6383358 CAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTTTG 6383299 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||| Sbjct 6383298 TTGCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTT 6383239 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| ||||||||| |||||||||||||||||| |||||||| Sbjct 6383238 CATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTT 6383179 Query 1485708 GTAAACAAAGGACGAGTA 1485725 ||| || || |||||| Sbjct 6383178 GTACACGTAGATCGAGTA 6383161 >seq1017 Length=38312 Score = 232 bits (256), Expect = 1e-54 Identities = 205/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 27212 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 27271 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 27272 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 27331 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 27332 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 27391 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 27392 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 27451 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 27452 ACACGTAGATCGAGTA 27467 Score = 210 bits (232), Expect = 3e-48 Identities = 200/256 (78%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| || ||||| ||||| |||||||||||| ||||||| ||||| ||| Sbjct 15997 TGTATTTTGTGACAGCTTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCAGGCA 16056 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | | ||| ||| ||||||||| | Sbjct 16057 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 16116 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 16117 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 16176 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 16177 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 16236 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 16237 ACACGTAGATCGAGTA 16252 Score = 190 bits (210), Expect = 3e-42 Identities = 195/256 (76%), Gaps = 9/256 (4%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||||||| | |||||||||||| ||||||| |||||| ||| Sbjct 15040 TGTACTTGGTGACGGCCG---------CAGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 14990 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 14989 GCAGGAGCCGCACGGCCGTCTGGATCTCCCGCCAGGTGATGGTGGAGCGCTTGTTGTAGT 14930 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| ||||||| | ||||||| |||| ||||||||||| || ||||||| Sbjct 14929 GCGCCAGGCGCGAGGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 14870 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 14869 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 14810 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 14809 ACACGTAGATCGAGTA 14794 >seq2050 Length=17083563 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||||||||||||||| ||||||| || || | | Sbjct 6970142 TGTACTTGGTGACAGCCTTGGTGCCCTCTGAGACGGCGTGTTTGGCCAGCTCTCCCGGGA 6970083 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||| ||||| |||| | ||| ||| |||||||| Sbjct 6970082 GCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGAGGTGATGGTGGACCGCTTGTTGTAAT 6970023 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| ||| || ||||||| || | |||||||||||||| ||||||| Sbjct 6970022 GGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 6969963 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| ||||||||| ||||||||| |||||||| |||||||||| Sbjct 6969962 TAATGCCCATGGCCTTGGAGGAGATGCCTGTGTCGGGGTGGACCTGCTTCAGCACCTTGT 6969903 Query 1485710 AAAC 1485713 | || Sbjct 6969902 AGAC 6969899 >seq5119 Length=37565 Score = 181 bits (200), Expect = 2e-39 Identities = 188/245 (77%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 4923 TGTATTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 4864 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG-CGCTTGTTAGTG 1485588 | || || ||||| ||||||||||| || | ||| ||| | |||||||| | Sbjct 4863 GCAGGAGCCGTACGGCCGTCTGGATCTCCCGCGAAGTGATGGTGGAGCCGCTTGTTGTAG 4804 Query 1485589 CGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || |||| || |||||| ||||||| |||| ||||||||||| || || ||| Sbjct 4803 CGAGCCAAACGCGAGGCCTCCCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAATTC 4744 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| |||||| || |||||||||||||||||| ||||||||| Sbjct 4743 ATGATGCCCATGGCCTTGGAGGAGATCCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTG 4684 Query 1485709 TAAAC 1485713 || || Sbjct 4683 TAGAC 4679 >seq2189 Length=419875 Score = 152 bits (168), Expect = 8e-31 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 269384 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCCAGCTCGCCGGGCA 269443 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | |||||| ||||| | ||||||| || ||| ||| ||| | ||| || | Sbjct 269444 GCAGGAGCCTCACGGCCGTCTGCACCTCGCGGCTGGTGATGGTGGAGCGGTGGTT-GTAC 269502 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | |||||||| |||||| | | | || |||| || |||||||| || |||||| Sbjct 269503 TGGGCCAGGCGCGAGGCCTCCAAGGCCAGCCGCTCGAAGATATCGTTGACGAAGGAGTTC 269562 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | || ||||||||| ||| |||||||||||| Sbjct 269563 ATGATGCTCATGGCCTTAGAGGAGATGCCGGTGTCTGGGTGCACCTGC 269610 >seq2900 Length=2966310 Score = 109 bits (120), Expect = 9e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 1590287 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 1590228 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || ||||| ||||||||| || ||||||||||| Sbjct 1590227 TACTGGATGGGGAAGACGACGAAGCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 1590175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7909911263019645