Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4031 86.0 5e-11 >seq4031 Length=5211696 Score = 86.0 bits (94), Expect = 5e-11 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | ||| |||| | || || ||||| || |||| Sbjct 1532930 CAAAAACTGTATTGGTTGGATTCATCGCAACTTGGTTCTTTGCAGCATCGCCGATCAACC 1532989 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||| || ||| || || || ||||| || ||||| |||| Sbjct 1532990 TCTCTGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTCCGGTTACCCTGGTCATTGGCAA 1533049 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || || | ||| | || || ||||| | | || || || | ||| | Sbjct 1533050 TGATTTCCACCTTCCCGTGTTGGAACACGCCAACACAGGAATAGGTGGTGCCAAGATCGA 1533109 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 1533110 TTCCGACAGC 1533119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737706501179430