Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2428 150 4e-31 seq59554 114 3e-20 seq2998 89.7 1e-12 >seq2428 Length=1050118 Score = 150 bits (166), Expect = 4e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || | ||||| || || || ||||| || || || || || ||| | | ||| Sbjct 346547 CGCAGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCA 346606 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| || || || ||||||||||| || || || ||||| || || || |||||||| Sbjct 346607 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 346666 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || ||||| ||||| || ||| | || || || |||| || || Sbjct 346667 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 346726 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| |||| ||||| ||||| ||||||||| Sbjct 346727 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 346762 >seq59554 Length=17215544 Score = 114 bits (126), Expect = 3e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || ||||||||||| ||| | || ||||| || ||||| || ||||| || || ||||| Sbjct 11136901 GCTTTATGGTGGTATTATGTCTCGAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 11136960 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || ||||| || ||||||| | || || ||||| ||||| || ||||| Sbjct 11136961 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 11137020 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || || | ||| | || ||||| ||| |||| || || |||| Sbjct 11137021 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 11137063 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 60443 CAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGTCCGTTTCCA 60502 || |||||| | |||| || || || || |||| ||||| || |||||||| || || Sbjct 11139939 CAGTTCCATGTGACTATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCCTTCCCT 11139998 Query 60503 AAATGGACACAATGGTCAGTTATCATTTATTCTATTACTTTTATATTACTGTTTGGTAAC 60562 ||||||| || ||| || || | ||| || | || || || | |||||||||||| Sbjct 11139999 AAATGGATGCACTGGGGTGTAATTTTCTATGCTGTCACCTTCATTCTCCTGTTTGGTAAC 11140058 Query 60563 TTCTATTTTAGAACATACAAG 60583 ||||| | | | ||||||||| Sbjct 11140059 TTCTACTATCGGACATACAAG 11140079 >seq2998 Length=790846 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| || ||||| ||||| || || || |||||||| || ||||| || ||| Sbjct 710861 CCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCGATCGTATCGTTGGGTTCCACCTCC 710920 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || || |||| |||||| || || |||||||| Sbjct 710921 AGGGTGATGGTTTTACCCGTCAGCGTCTTCACGAAGATCTGCAT 710964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981078018289145