Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq631 149 6e-31 seq2428 132 5e-26 seq3413 100 3e-16 >seq631 Length=15915561 Score = 149 bits (164), Expect = 6e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| ||| | ||| | ||||| ||| Sbjct 10045723 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGC 10045782 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || |||| |||||| ||||| ||||| || |||||||| |||| Sbjct 10045783 TGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATC 10045842 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| |||||| ||||||| || || | ||||| ||| |||||| Sbjct 10045843 TTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCG 10045902 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || ||||| ||||||||| Sbjct 10045903 GTCAGGGTCTTCACGAAGATCTGCATG 10045929 Score = 149 bits (164), Expect = 6e-31 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| ||| | ||| | ||||| ||| Sbjct 10045951 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGC 10046010 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || |||| |||||| ||||| ||||| || |||||||| |||| Sbjct 10046011 TGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATC 10046070 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| |||||| ||||||| || || | ||||| ||| |||||| Sbjct 10046071 TTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCG 10046130 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 ||||| || || ||||| ||||||||| Sbjct 10046131 GTCAGGGTCTTCACGAAGATCTGCATG 10046157 Score = 147 bits (162), Expect = 2e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||||| || ||||| || ||||| ||| | ||| | ||||| ||| Sbjct 10046179 AAGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGC 10046238 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| | || |||| |||||| ||||| ||||| || |||||||| |||| Sbjct 10046239 TGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATC 10046298 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | ||||| |||||| ||||||| || || | ||||| ||| |||||| Sbjct 10046299 TTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCG 10046358 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || ||||| |||||||| Sbjct 10046359 GTCAGCGTCTTCACGAAGATCTGCAT 10046384 >seq2428 Length=1050118 Score = 132 bits (146), Expect = 5e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| | ||| ||| | || || |||| Sbjct 346558 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCA-TCTTCCAGCT 346616 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| || | || |||| |||||| ||||| || |||||||||||||| ||||| Sbjct 346617 GCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCT 346676 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||||| ||||||| || || | ||||| ||| ||||| | Sbjct 346677 TGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAG 346736 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 346737 TCAGGGTCTTCACAAAGATCTGCAT 346761 >seq3413 Length=458949 Score = 100 bits (110), Expect = 3e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || || || | |||||||||||||||||||| |||| ||||| |||||| Sbjct 395994 TACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 396053 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| | |||||| | ||| |||||||||||||||||| ||| || || Sbjct 396054 CTCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGTGTGCCGGTCTC 396103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483060923428200