Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq5288 163 3e-35 seq59554 132 6e-26 seq4036 93.3 5e-14 >seq5288 Length=2999883 Score = 163 bits (180), Expect = 3e-35 Identities = 548/845 (65%), Gaps = 20/845 (2%) Strand=Plus/Plus Query 162160 ATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCAC 162219 ||||| || || || ||| || || || || || || || | ||| || |||||||| Sbjct 1400395 ATCCAGTTCAGGTCTCCCACCCCAAAAACACAGACAGAGCGAATGTGAACTCCGCTGCAT 1400454 Query 162220 GGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTA 162279 || || || | || || | | |||||| || || |||| |||||||| || ||||| Sbjct 1400455 GGTGGGTAAGGTGCACCTTTGGACACATCACCTTCAAAGTACTGCCACTTGACAAACCTG 1400514 Query 162280 GTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAAC 162338 | | || | |||||| || |||||||||| |||| || | || || || || || Sbjct 1400515 GCCAGTGCATTCATGTCAGAAACATCGTACTTGT-CACTAGAAGAAACTGCACCTGGCAC 1400573 Query 162339 ACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGA 162398 | || | |||||| | || |||||||||| || ||||| || || || || || | Sbjct 1400574 TTCAGGGATTCTCTGAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTGTCTTTTGC 1400633 Query 162399 CCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACCT 162455 |||||| ||||| | | | |||| | | || ||||| || | || Sbjct 1400634 CCACTCAATGAATT---TAAGTATTTTGCTGCTTTCTAATATGTATTCTACAAATCTTCT 1400690 Query 162456 GGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTT 162515 | | || | ||| || || ||||||||||| | || | | | ||| || | | ||| Sbjct 1400691 GCTAACTACAAAATAGGCACTACCAGAAAAAATCGGAGTACTGAGAGGTGGTAGTTTTTT 1400750 Query 162516 GTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGC 162575 |||| || ||||| || | || || | | | | || |||| |||| || | Sbjct 1400751 GTCTATGCCTGTGTTCTTTATTTTACCATCAATAATCTCATGGTGCTTCTTCCATCTTAC 1400810 Query 162576 CATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCT 162631 ||| || || || | ||| || || | ||||| ||| | ||| | Sbjct 1400811 TTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCTT 1400866 Query 162632 TCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAA 162691 | | | || || || | |||||||| | || ||||| |||| ||||| || | Sbjct 1400867 TTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGGAAGTCCATGCCACAGAGGTTTA 1400926 Query 162692 TAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCT 162751 | | |||||||| || || || ||| ||||| | | ||||| | || |||| Sbjct 1400927 TTAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCT 1400986 Query 162752 GGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGT 162811 | || | ||||| || || || || || ||||| ||| ||| | |||||| || | Sbjct 1400987 GCACCCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTGGAAATAAAGACGTTAT 1401046 Query 162812 CGAAACACGAAACTATCCCCATCACGGCCAG--TGAGAACATCGGGTCCGCTTTCCTATC 162869 | ||||| || ||||| ||| |||| || || | | || || | |||| |||| Sbjct 1401047 CAAAACATGAGACTATTCCCTTCACAGC-AGCATAAAAAGATTCTGGAGACTTTT-TATC 1401104 Query 162870 TACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACAT 162929 || || | |||||| | |||||||||||||||||| | || || | ||| || | ||| Sbjct 1401105 AACATGAATGCAGTAAAAATTCTGAGGGGCGTAGATTGATCTTAGAAGTCTATCAAGCAT 1401164 Query 162930 CTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACT 162989 ||| || || || | ||||| || |||||||| || || || || || || || || Sbjct 1401165 CTCAATTTTGTGATAAACCACTATTGAATACGCAATTGGAAATTCTGCTTCTTCATTGCT 1401224 Query 162990 GAGAG 162994 ||||| Sbjct 1401225 GAGAG 1401229 >seq59554 Length=17215544 Score = 132 bits (146), Expect = 6e-26 Identities = 399/607 (66%), Gaps = 13/607 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | |||||| ||||||| |||| | || | |||| Sbjct 3923628 GCCAGCTCTCTGGGGGAGAGAAAATCTTCCACGTGTATGAAAGAGTCTGCTGGAATGTAA 3923687 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || || || | ||||| | || |||| ||||| Sbjct 3923688 TTCTCATAGTTTTCTCTGGAAGGGCCTAGAACAACTGGTACTGATCCAGCCAGAAGAGCA 3923747 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || ||| |||| | || || ||||| | || |||||| Sbjct 3923748 TTGTAAAGTTTCTCAGTAATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGGTAGAAT 3923807 Query 177126 TTACAGGA--AGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| | | || |||| | ||| | ||| ||||| | | | Sbjct 3923808 TTGCAAGTGGAGATAGTTG--GAATCAAGTTTTTATCATTGACATAGTCTCCAAAGGCTT 3923865 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 || || ||| || || |||| ||| || ||||| ||| || || || || || Sbjct 3923866 GTCCATAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCG 3923924 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGGA 177302 || || |||||| || || || ||||| || || | || ||| || || Sbjct 3923925 TGCTCAGGGTTCCAGTTACTTACAACCCAACACACCAGGTTTTCCTTACTTGGCAC---- 3923980 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | ||| | | | | | || | | | | ||||| ||||| ||||||||||| Sbjct 3923981 TTCAAATGTAAAGGAACTTGTACCGACCATCATGAAGCCATAAGGCACCTGAATATCCGA 3924040 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCT-TGTTTGAAGGGGC 177420 || || | || || | || || || || |||| ||| || || | ||| || | Sbjct 3924041 ATCACGCCGATAAGTCAGGGTCAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGAG- 3924099 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 | | | | || || || ||||||||||| |||||||| || || | ||| |||| || | Sbjct 3924100 TATGAGTTGGAGACTCCAAGTTCATCCAAATCCACTTCTGGAATGGTGGCCTGGCTTGCT 3924159 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | || |||| || || || ||||| |||| || || |||| || || Sbjct 3924160 GAGGTAAATTAGTCAGATCCCAGCTAATGTCCCTGTGATGAATGAGAACAGCATGGGATT 3924219 Query 177541 TGTAATA 177547 ||| ||| Sbjct 3924220 TGTTATA 3924226 >seq4036 Length=7929983 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/264 (69%), Gaps = 4/264 (2%) Strand=Plus/Plus Query 162722 ACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGC 162781 |||| ||||| | ||||| || |||||||| | || ||| || || || || || Sbjct 5710113 ACAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCATAGACCACCT 5710172 Query 162782 TCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCA 162841 | |||| | | || |||||||||||| ||| || | || || || ||||||| Sbjct 5710173 TTTCCAGGCGGCTAGCCACAAAGACATTGGGGAAGCAGGCTACGATGGCCCGCACGGCCT 5710232 Query 162842 GTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGC 162899 ||| || | || ||| | || | ||| | |||||| | ||||| ||||| Sbjct 5710233 CCTGGAAGGCAGCCGGGGA-CTTGGCG-TCAATGTGGATGCAGTAGACGTTCTGGGGGGC 5710290 Query 162900 GTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATA 162959 ||||| | || ||| | | ||||||||||||||| || | ||| || || || || || Sbjct 5710291 GTAGAGAGACCGCAGGAGCCGCTCGAACATCTCTATTTTGTTGTGGACGACCATGGAGTA 5710350 Query 162960 CGCTATGGGGAACTCAGCCTCCTC 162983 || ||||||||||| ||||||| Sbjct 5710351 GGCGATGGGGAACTCTTCCTCCTC 5710374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578001393528000