Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5158 122 3e-24 seq3722 113 1e-21 seq1960 100 9e-18 seq3281 98.7 3e-17 seq631 98.7 3e-17 seq3893 95.1 4e-16 >seq5158 Length=5870365 Score = 122 bits (134), Expect = 3e-24 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 4848434 GCTGAAGTAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 4848493 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 4848494 CCGGGCTTCAGC 4848505 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 4860626 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 4860567 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 4860566 CCGGGCTTCAGC 4860555 >seq3722 Length=12778788 Score = 113 bits (124), Expect = 1e-21 Identities = 72/77 (94%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTT 2823 || |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 4999453 TAGGGCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTTAAAGGTCCCTGGTT 4999394 Query 2824 CAACCCCGGGCTTCAGC 2840 ||| || |||||||||| Sbjct 4999393 CAATCCTGGGCTTCAGC 4999377 >seq1960 Length=1670 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||| | Sbjct 755 GGCTGAAGAAGCTCATCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGCTTCAGC 814 Query 2828 CCCGGGCTTCAGC 2840 |||||||| |||| Sbjct 815 CCCGGGCTCCAGC 827 >seq3281 Length=2807514 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1079932 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1079873 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1079872 CCGGGTTTCGGC 1079861 >seq631 Length=15915561 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 10050729 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 10050670 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10050669 CCGGGTTTCGGC 10050658 >seq3893 Length=1163546 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||| | | Sbjct 125095 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 125154 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 125155 CCGGGTTTCGGC 125166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15839275842975