Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2428 120 3e-22 seq631 107 2e-18 >seq2428 Length=1050118 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | || || | || ||||||||||| || ||||| Sbjct 346570 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCCAGCTGCTTGCCAGCAAA 346629 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || ||||||||| |||||| ||||| | | Sbjct 346630 GATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 346689 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || |||| || ||||| Sbjct 346690 CTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 346749 Query 35725 AAATATCTGCATTCTG 35740 ||| ||||||||| || Sbjct 346750 AAAGATCTGCATTTTG 346765 >seq631 Length=15915561 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| ||| | || ||||||||||| || || || Sbjct 10046194 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAG 10046253 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | | |||||||||| |||||| ||| | | Sbjct 10046254 ATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 10046313 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||||| ||||| || || || |||| || ||||| Sbjct 10046314 TCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGCGTCTTCACG 10046373 Query 35726 AATATCTGCATT 35737 || ||||||||| Sbjct 10046374 AAGATCTGCATT 10046385 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| ||| | || ||||||||||| || || || Sbjct 10045738 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAG 10045797 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | | |||||||||| |||||| ||| | | Sbjct 10045798 ATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 10045857 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||||| ||||| || || || |||| || ||||| Sbjct 10045858 TCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 10045917 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 10045918 AAGATCTGCAT 10045928 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| | ||| ||| | || ||||||||||| || || || Sbjct 10045966 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAG 10046025 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | | |||||||||| |||||| ||| | | Sbjct 10046026 ATCAGCCTCTGCTGATCGGGGGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTC 10046085 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||||| ||||| || || || |||| || ||||| Sbjct 10046086 TCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 10046145 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 10046146 AAGATCTGCAT 10046156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450458012339400