Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2900 107 2e-18 seq4557 104 2e-17 seq3920 87.8 1e-12 >seq2900 Length=2966310 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 43907 TTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATA 43966 ||| | |||||||| ||| | |||| || || ||||| ||||| || || |||||||| Sbjct 1591072 TTTACTCAAGAAGTACAAATCACAGAGGCTCGTTGTTTCTATGGCTTCCAGATTGCCATG 1591131 Query 43967 GAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| || ||||| ||||||||||||||||| || || || ||||| |||||| Sbjct 1591132 GAAAACATACATTCAGAAATGTACAGTCTTCTTATTGACACCTACATAAAAGAT 1591185 >seq4557 Length=5370844 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| || || ||| | || ||||| || ||| ||||||||| ||| Sbjct 894030 TGATGGCTTTGCCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAATTGT 893971 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 893970 CTTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 893911 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 893910 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 893874 >seq3920 Length=14118619 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 43928 CCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATG 43987 |||||||| || ||||| ||||| ||||| ||| ||| || || ||||||| || ||| Sbjct 11390065 CCAGAAGCTCGTTGTTTCTATGGCTTTCAGATTCTCATTGAGAACGTTCATTCAGAGATG 11390006 Query 43988 TACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| | |||||||| || |||||||||||| Sbjct 11390005 TACAGCTTGCTGATAGACACCTACATCAAAGAT 11389973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397167515877775