Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nipponia_20nippon_20[refseq_20GCF_5F000708225.1_202014-06-16] 59,555 sequences; 1,223,863,029 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4031 190 6e-43 seq1907 167 7e-36 seq2428 136 1e-26 seq1248 89.7 2e-12 seq902 84.2 7e-11 >seq4031 Length=5211696 Score = 190 bits (210), Expect = 6e-43 Identities = 370/539 (69%), Gaps = 8/539 (1%) Strand=Plus/Minus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||| ||||| | || ||||| || || ||||| || | || || ||||||| | Sbjct 1531822 TTCTTATCTTTGACCTGGGAGGTGGCACCTTCGATGTGTCGATTCTGACTATTGAAGATG 1531763 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || ||| | ||||| ||||| || || | ||||||||||| ||||| | Sbjct 1531762 GCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAAGACTTTGACA 1531703 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGA 349948 | || | || || || | ||||| ||||| ||||| || | || || | Sbjct 1531702 ACCGCATGGTCAACCACTTCATCGCTGAATTCAAGCG-CAAGCACAAGAAAGACATCAGC 1531644 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 || || |||||| | |||||||| | || ||||| || ||||| |||||| | | Sbjct 1531643 GAGAACAAGAGAGCAGTTCGTCGCCTCCGCACCGCGTGCGAGCGTGCAAAGCGTACTCTG 1531584 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 || || | || || || |||||||||||||||||| ||| || | || |||| Sbjct 1531583 TCTTCGAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTATTGACTTCTAC 1531524 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126 |||| ||||| | ||||| |||||||| || ||| ||| | || | | || Sbjct 1531523 ACATCCATTACCAGAGCTCGCTTTGAAGA--GCTGAATGCTGATTTGTTCCGTGGCACCC 1531466 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186 |||||||||||||||| | | |||||| ||| | ||| ||||| |||| Sbjct 1531465 TGGATCCTGTGGAAAAGGCCCTGCGAGATGCCAAACTCGACAAGTCGCAGATCCATGACA 1531406 Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246 | || | |||||||| ||||| ||||| ||||| |||| | | || || || | Sbjct 1531405 TCGTGCTGGTTGGTGGGTCTACTCGTATCCCAAAGATTCAGAAACTGCTGCAGGATTTCT 1531346 Query 350247 TTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | || |||||||| | | ||| | || ||||| ||||||||||| || |||||||| Sbjct 1531345 TCAACGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGCTTATGGTGC 1531288 Score = 134 bits (148), Expect = 4e-26 Identities = 355/533 (67%), Gaps = 8/533 (2%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | |||||||| || Sbjct 1531286 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCGTTG 1531344 Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||| | ||| || ||||| ||||| || | ||| || ||||| || | || Sbjct 1531345 AAGAAATCCTGCA-GCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCAC 1531403 Query 183380 TACTTCATCGATATT--ACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGG 183437 | |||| ||| | |||| | | | |||| | |||| | | ||||| ||||| Sbjct 1531404 GATGTCATGGATCTGCGACTTGT-CGAGTTTG-GCATCTCGCAGGGCCTTTTCCACAGGA 1531461 Query 183438 TCCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGAT 183497 |||| || | || ||||| | | |||||| || | ||||| || | ||| Sbjct 1531462 TCCAGGGTGCCACGGAACAAATCAGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGAT 1531521 Query 183498 GaaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGAT 183557 | | ||||||||||| | ||| | |||||||||||||| | || || || Sbjct 1531522 GTGTAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTCGAA 1531581 Query 183558 GATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTA 183617 || | || | || || || || || || || | || ||||| | || ||| || Sbjct 1531582 GACAGAGTACGCTTTGCACGCTCGCACGCGGTGCGGAGGCGACGAACTGCTCTCTTGTTC 1531641 Query 183618 TCTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTT 183677 || | || |||| || || || | || ||||||| || || || | | | | Sbjct 1531642 TCGCTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGG 1531701 Query 183678 GTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATT 183737 | ||||| ||||| ||||| || || || || || ||||| | ||| || ||||| || Sbjct 1531702 TTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATG 1531761 Query 183738 CCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || ||||||||| | | ||| || ||||| || || ||||| |||| ||||| Sbjct 1531762 CCATCTTCAATAGTCAGAATCGACACATCGAAGGTGCCACCTCCCAGGTCAAA 1531814 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 ||||||| | ||||||||||||||||| ||||| | |||||| || |||||||||| Sbjct 1532086 ATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATG 1532027 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | |||||| ||| | || || || |||| || ||||| || || ||||| || | Sbjct 1532026 CTGGAACCATTGCAGGGCTCAACGTACTGCGAATCATCAATGAGCCGACAGCTGCTGCGA 1531967 Query 349728 TTGCATATGGGCTTGATAAAA 349748 | || ||||| || || |||| Sbjct 1531966 TAGCCTATGGTCTGGACAAAA 1531946 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 1532352 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 1532296 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || ||||| || | ||| | || ||||| ||||||||||| || || Sbjct 1532295 GTCCAGGTGGAGTACAAAGGCGAG-ACAAAGAGCTTCTACCCAGAAGAAATTTCTTCCAT 1532237 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 1532236 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 1532200 >seq1907 Length=2255496 Score = 167 bits (184), Expect = 7e-36 Identities = 571/878 (65%), Gaps = 18/878 (2%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGG-TGAAACAGTAACTGATGCTGTTATTAC 349620 || |||||||| || ||||| || ||| | || || || || ||||||| || || Sbjct 1281550 AAGATGAAGGAGATCGCTGAGGCCTATCTGGGGTGCAAG-GTGCAGAATGCTGTCATCAC 1281608 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || || || || || ||||||| || || ||||| || |||| ||| | Sbjct 1281609 AGTGCCTGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAAGACGCCGGCACCATCAC 1281668 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || | | || || || || ||||| || || || || || ||||| || Sbjct 1281669 TGGCCTTAACGTGATGCGTATTATCAACGAGCCCACGGCAGCTGCTATAGCCTATGG-CT 1281727 Query 349741 TG----ATAAA---ATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTG 349793 || | ||| | | | | || || || | || || ||||| || || || | Sbjct 1281728 TGGACAAGAAAGGTACGCGGGCTGGCGAGAAGAACGTGCTCATCTTTGACTTGGGAGGGG 1281787 Query 349794 GTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 | ||||| ||||| || | || || |||| || || || ||||| || || | || | Sbjct 1281788 GCACTTTCGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCCACAG 1281847 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 ||||||| || ||||| ||||| || || ||||| || || | || |||||||| Sbjct 1281848 CTGGTGACACCCATCTGGGTGGCGAGGACTTTGACAACCGCATGGTGAACCATTTTGTGG 1281907 Query 349914 AAGAATTTAAGCGTCAAGCTAAAAT-TGATATTGGAGATAATCCTAGAGCAATGCGTCGC 349972 ||||||| |||||| |||| || ||| |||| | || ||||| || | || Sbjct 1281908 AAGAATTCAAGCGT-AAGCACAAGCGTGACATTGCTGGCAACAAGCGAGCAGTGAGGCGA 1281966 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || | || || ||||| | || ||||| || | ||| | || ||| | ||| Sbjct 1281967 CTGCGTACGGCTTGTGAGAGGGCGAAGCGCACCCTCAGCTCTTCCACGCAAGCTAGCATT 1282026 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTT 350092 || || || || || || |||| || |||| | || ||||| ||||| || ||| Sbjct 1282027 GAGATCGACTCCCTCTACGAGGGCATTGACTTCTACACCTCCATTACTCGTGCCCGCTTT 1282086 Query 350093 GAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAA 350150 || || | | ||| ||||| || | | || |||| || ||||| || | | Sbjct 1282087 GAGGAGCT--GAATGCCGATCTCTTCCGCGGCACCCTGGAGCCAGTGGAGAAGGCTCTGC 1282144 Query 350151 AAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACAC 350210 ||||| || | ||| ||||| | || | || | || ||||| ||||| | Sbjct 1282145 GCGATGCTAAGCTAGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTCTACCC 1282204 Query 350211 GTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGA 350269 |||| || || | ||| || | ||| || || || ||||||||||| | | | ||| Sbjct 1282205 GTATCCCCAAGATCCAAAAGCTGCTACAGGACTTCTTCAATGGCAAAGAGCTCAACAAGA 1282264 Query 350270 TCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATCT 350329 | || || || ||||| |||||||| || || |||||||| || ||| |||| | Sbjct 1282265 GC-ATCAACCCTGATGAGGCTGTTGCTTACGGCGCTGCTGTGCAAGCAGCTATACTCATG 1282323 Query 350330 GGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTT 350389 ||| | ||| | || | | ||||| | || | ||||| || || || || || Sbjct 1282324 GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGTTGGATGTCACCCCTCTGTCCCTG 1282383 Query 350390 GGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTAT 350427 || |||| || |||||| ||| ||||| | ||| || Sbjct 1282384 GGCATAGAGACAGCTGGTGGAGTGATGACCGCTCTCAT 1282421 >seq2428 Length=1050118 Score = 136 bits (150), Expect = 1e-26 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || ||||| || || || || || || || | || || |||||| Sbjct 346550 AGCACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCT 346609 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 346610 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 346669 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| || ||||| || || || | ||| Sbjct 346670 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 346729 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || || || ||||| ||||||||| Sbjct 346730 TTGCCAGTCAGGGTCTTCACAAAGATCTGCATT 346762 >seq1248 Length=7382639 Score = 89.7 bits (98), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 |||||| ||||||| |||||||| || |||||||| |||||| || || ||||||||| Sbjct 6217254 GCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACGAAAGATGCT 6217195 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 || | ||||| ||||| || || | ||||| ||||| || || Sbjct 6217194 GGTACTATTGCTGGGTTGAACGTGATGAGAATTATTAACGAGCC 6217151 >seq902 Length=9301869 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||||||||| || || ||||| | || || |||||||| || || || |||||||| | Sbjct 2123998 CTTTTTGAATGTTGTAGTCAGACAGCGTGCGTCCATCTTCTAGCTGCTTACCAGCAAAAA 2123939 Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636 | || || ||||||||||||||||| ||| Sbjct 2123938 TCAGTCGCTGCTGATCAGGAGGAATGCCT 2123910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514098187497665